miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 5' -53.2 NC_006273.1 + 94516 0.77 0.56796
Target:  5'- ----cGGCCCGGGGGGaCCCGAGcgggGGCu -3'
miRNA:   3'- uuuuuUCGGGCCUCCCcGGGUUU----UCG- -5'
29806 5' -53.2 NC_006273.1 + 94894 0.71 0.878751
Target:  5'- ----cGGuCCCGGAagguugggggcugGGGGCCCGgucaGGAGCu -3'
miRNA:   3'- uuuuuUC-GGGCCU-------------CCCCGGGU----UUUCG- -5'
29806 5' -53.2 NC_006273.1 + 95020 0.66 0.983027
Target:  5'- -cGAGGGUCCGGccgccagucgugaccGGGGGUCCcucGGCc -3'
miRNA:   3'- uuUUUUCGGGCC---------------UCCCCGGGuuuUCG- -5'
29806 5' -53.2 NC_006273.1 + 95473 0.69 0.929172
Target:  5'- ------uCCUGGAGGGGUCCGGAAc- -3'
miRNA:   3'- uuuuuucGGGCCUCCCCGGGUUUUcg -5'
29806 5' -53.2 NC_006273.1 + 95505 0.67 0.975417
Target:  5'- gGGGAGGGuCCCGGcacGGGCCgAGGAGa -3'
miRNA:   3'- -UUUUUUC-GGGCCuc-CCCGGgUUUUCg -5'
29806 5' -53.2 NC_006273.1 + 101845 0.66 0.98416
Target:  5'- ----cGGCuCCaGAGGcuGGCCCAGAGcGCg -3'
miRNA:   3'- uuuuuUCG-GGcCUCC--CCGGGUUUU-CG- -5'
29806 5' -53.2 NC_006273.1 + 113517 0.73 0.788723
Target:  5'- cGGGuuGCCCGG-GGGGCgCGcgGGCg -3'
miRNA:   3'- uUUUuuCGGGCCuCCCCGgGUuuUCG- -5'
29806 5' -53.2 NC_006273.1 + 113724 0.67 0.977874
Target:  5'- cGAGGAcAGCgCCGGAGGuGGCgaCGGcGGCg -3'
miRNA:   3'- -UUUUU-UCG-GGCCUCC-CCGg-GUUuUCG- -5'
29806 5' -53.2 NC_006273.1 + 115083 0.67 0.966857
Target:  5'- -----cGCCCGGuGaGGGaCCCucgucGGAAGCg -3'
miRNA:   3'- uuuuuuCGGGCCuC-CCC-GGG-----UUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 117230 0.71 0.841058
Target:  5'- gGAAGAGGCCgCaGAGGGGagagccgCCGAAAGUa -3'
miRNA:   3'- -UUUUUUCGG-GcCUCCCCg------GGUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 117814 0.69 0.939197
Target:  5'- --cGAAGCagaaGGAGGGGCCgCuacGGCg -3'
miRNA:   3'- uuuUUUCGgg--CCUCCCCGG-GuuuUCG- -5'
29806 5' -53.2 NC_006273.1 + 121282 0.66 0.987527
Target:  5'- ---cAGGCCCGGGaugcucuuGGGacacagcaGCCCAAAAuGCu -3'
miRNA:   3'- uuuuUUCGGGCCU--------CCC--------CGGGUUUU-CG- -5'
29806 5' -53.2 NC_006273.1 + 122415 0.67 0.975417
Target:  5'- --cGGAGUCCGGcGGaucgcGGCCCucccAAAGCg -3'
miRNA:   3'- uuuUUUCGGGCCuCC-----CCGGGu---UUUCG- -5'
29806 5' -53.2 NC_006273.1 + 125775 0.67 0.977874
Target:  5'- --cGAGGCCCaGGGGuuguguguGGCCgCGAAAGUc -3'
miRNA:   3'- uuuUUUCGGGcCUCC--------CCGG-GUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 134833 0.67 0.977874
Target:  5'- --cAGAGUCgGGGuGGGGCCgGAcagguGAGCc -3'
miRNA:   3'- uuuUUUCGGgCCU-CCCCGGgUU-----UUCG- -5'
29806 5' -53.2 NC_006273.1 + 136865 0.66 0.985921
Target:  5'- ------uCCCGGAGGGGggaAGAGGCa -3'
miRNA:   3'- uuuuuucGGGCCUCCCCgggUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 140164 0.76 0.61919
Target:  5'- ----cAGCCUGGuGGGGUCC-GAGGCg -3'
miRNA:   3'- uuuuuUCGGGCCuCCCCGGGuUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 140613 1.09 0.007137
Target:  5'- aAAAAAAGCCCGGAGGGGCCCAAAAGCc -3'
miRNA:   3'- -UUUUUUCGGGCCUCCCCGGGUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 140657 0.66 0.982238
Target:  5'- aAGGGGAGCUgGGuGGGGgaucCCCGGucGCc -3'
miRNA:   3'- -UUUUUUCGGgCCuCCCC----GGGUUuuCG- -5'
29806 5' -53.2 NC_006273.1 + 140791 0.66 0.985921
Target:  5'- cGGGAAGCCggCGGAGGucgCCGGGAGCa -3'
miRNA:   3'- uUUUUUCGG--GCCUCCccgGGUUUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.