miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 5' -53.2 NC_006273.1 + 234777 0.67 0.975417
Target:  5'- --cAGGGCCgCGGAcuGGGUCCccGAGCg -3'
miRNA:   3'- uuuUUUCGG-GCCUc-CCCGGGuuUUCG- -5'
29806 5' -53.2 NC_006273.1 + 220883 0.68 0.963246
Target:  5'- ----cAGCCCuuGGGGGGaCCCAAGgacagacAGCg -3'
miRNA:   3'- uuuuuUCGGGc-CUCCCC-GGGUUU-------UCG- -5'
29806 5' -53.2 NC_006273.1 + 215743 0.66 0.987527
Target:  5'- cAAGAAGCgaCCGcAGuGGGCCCAc-AGCa -3'
miRNA:   3'- uUUUUUCG--GGCcUC-CCCGGGUuuUCG- -5'
29806 5' -53.2 NC_006273.1 + 213681 0.66 0.987527
Target:  5'- -cGAAAGCCaggucgcaGGAGcGGUCCGAGuGGCg -3'
miRNA:   3'- uuUUUUCGGg-------CCUCcCCGGGUUU-UCG- -5'
29806 5' -53.2 NC_006273.1 + 211712 0.66 0.98416
Target:  5'- ---cGGGCCUcuGGGGGCCgCAcGGAGCg -3'
miRNA:   3'- uuuuUUCGGGccUCCCCGG-GU-UUUCG- -5'
29806 5' -53.2 NC_006273.1 + 210778 0.72 0.824299
Target:  5'- cGAAGAGCgCGGAGGccacaGGCaCCAGGAGg -3'
miRNA:   3'- uUUUUUCGgGCCUCC-----CCG-GGUUUUCg -5'
29806 5' -53.2 NC_006273.1 + 206323 0.69 0.923796
Target:  5'- ------aCCCGcGAccGGGGCCCAGAGGg -3'
miRNA:   3'- uuuuuucGGGC-CU--CCCCGGGUUUUCg -5'
29806 5' -53.2 NC_006273.1 + 195821 0.66 0.985921
Target:  5'- ----cGGUCgCGGccgcGGGGCCgGAGGGCc -3'
miRNA:   3'- uuuuuUCGG-GCCu---CCCCGGgUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 190212 0.7 0.893306
Target:  5'- uGAAcAGCagCGGcuacAGGGGCCCGAGAuGCa -3'
miRNA:   3'- uUUUuUCGg-GCC----UCCCCGGGUUUU-CG- -5'
29806 5' -53.2 NC_006273.1 + 189041 0.71 0.864734
Target:  5'- ----cAGCCgcgUGGuGGGGGCCCGGAccGGCg -3'
miRNA:   3'- uuuuuUCGG---GCC-UCCCCGGGUUU--UCG- -5'
29806 5' -53.2 NC_006273.1 + 186643 0.68 0.952436
Target:  5'- ---cGAGCUCGGAcGGGCUCGuu-GCa -3'
miRNA:   3'- uuuuUUCGGGCCUcCCCGGGUuuuCG- -5'
29806 5' -53.2 NC_006273.1 + 182781 0.73 0.788723
Target:  5'- cGAGAAGCCUGcGAGGcucucaaaaaGGCCCugcgGAGGCa -3'
miRNA:   3'- uUUUUUCGGGC-CUCC----------CCGGGu---UUUCG- -5'
29806 5' -53.2 NC_006273.1 + 181836 0.68 0.963585
Target:  5'- -uAGGAGCCUGGGGGuucuGCCCAAc--- -3'
miRNA:   3'- uuUUUUCGGGCCUCCc---CGGGUUuucg -5'
29806 5' -53.2 NC_006273.1 + 174960 0.68 0.963585
Target:  5'- ---cGAGCUCgaGGAGGGGCCgcugccCGGGGGUg -3'
miRNA:   3'- uuuuUUCGGG--CCUCCCCGG------GUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 174707 0.71 0.857046
Target:  5'- uAAGAAGCCaagGGGGuGGGCCUAuAGAGUc -3'
miRNA:   3'- uUUUUUCGGg--CCUC-CCCGGGU-UUUCG- -5'
29806 5' -53.2 NC_006273.1 + 165443 0.7 0.89988
Target:  5'- cAGAAAGCCUugaccuguucggGGAGGuGGUCgGGGGGCa -3'
miRNA:   3'- uUUUUUCGGG------------CCUCC-CCGGgUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 162978 0.72 0.797854
Target:  5'- cGAGAcGCgCGGAGGaGGCUCGAcGGCg -3'
miRNA:   3'- uUUUUuCGgGCCUCC-CCGGGUUuUCG- -5'
29806 5' -53.2 NC_006273.1 + 156208 0.77 0.578142
Target:  5'- gAGGAGAGCagcacguuaCCGGAGGGGCUCGAAacaucaucagggGGCu -3'
miRNA:   3'- -UUUUUUCG---------GGCCUCCCCGGGUUU------------UCG- -5'
29806 5' -53.2 NC_006273.1 + 151465 0.66 0.987527
Target:  5'- ---uAGGCCuCGGGuacGGGGUCCAGcguGCc -3'
miRNA:   3'- uuuuUUCGG-GCCU---CCCCGGGUUuu-CG- -5'
29806 5' -53.2 NC_006273.1 + 149579 0.7 0.89988
Target:  5'- ---cGGGCCCguGGAGGaGGCaaGAAAGCu -3'
miRNA:   3'- uuuuUUCGGG--CCUCC-CCGggUUUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.