miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 5' -53.2 NC_006273.1 + 95505 0.67 0.975417
Target:  5'- gGGGAGGGuCCCGGcacGGGCCgAGGAGa -3'
miRNA:   3'- -UUUUUUC-GGGCCuc-CCCGGgUUUUCg -5'
29806 5' -53.2 NC_006273.1 + 95473 0.69 0.929172
Target:  5'- ------uCCUGGAGGGGUCCGGAAc- -3'
miRNA:   3'- uuuuuucGGGCCUCCCCGGGUUUUcg -5'
29806 5' -53.2 NC_006273.1 + 42030 0.69 0.929172
Target:  5'- cAAAGAGCCUccgGGAGGcGCCCGguuuacgugucgGGGGCg -3'
miRNA:   3'- uUUUUUCGGG---CCUCCcCGGGU------------UUUCG- -5'
29806 5' -53.2 NC_006273.1 + 8377 0.68 0.952436
Target:  5'- uAGAGAcauGGUuuGGGGGGGaCCGGcGGCg -3'
miRNA:   3'- -UUUUU---UCGggCCUCCCCgGGUUuUCG- -5'
29806 5' -53.2 NC_006273.1 + 94325 0.68 0.955996
Target:  5'- --cGAGGCCCGGcGccgguccguccgcGGGCCCGucccaccgcccuGGAGCa -3'
miRNA:   3'- uuuUUUCGGGCCuC-------------CCCGGGU------------UUUCG- -5'
29806 5' -53.2 NC_006273.1 + 73757 0.68 0.960095
Target:  5'- --cGAGGCCCGGcAGcGGCgCCGccAGCg -3'
miRNA:   3'- uuuUUUCGGGCC-UCcCCG-GGUuuUCG- -5'
29806 5' -53.2 NC_006273.1 + 220883 0.68 0.963246
Target:  5'- ----cAGCCCuuGGGGGGaCCCAAGgacagacAGCg -3'
miRNA:   3'- uuuuuUCGGGc-CUCCCC-GGGUUU-------UCG- -5'
29806 5' -53.2 NC_006273.1 + 73357 0.67 0.969915
Target:  5'- cAGAAGAGCCagcaccAGcGGGCCCAGAGucGCa -3'
miRNA:   3'- -UUUUUUCGGgcc---UC-CCCGGGUUUU--CG- -5'
29806 5' -53.2 NC_006273.1 + 234777 0.67 0.975417
Target:  5'- --cAGGGCCgCGGAcuGGGUCCccGAGCg -3'
miRNA:   3'- uuuUUUCGG-GCCUc-CCCGGGuuUUCG- -5'
29806 5' -53.2 NC_006273.1 + 206323 0.69 0.923796
Target:  5'- ------aCCCGcGAccGGGGCCCAGAGGg -3'
miRNA:   3'- uuuuuucGGGC-CU--CCCCGGGUUUUCg -5'
29806 5' -53.2 NC_006273.1 + 48684 0.69 0.917603
Target:  5'- aGAGGAAGCCCauguaGGucucGGGGUCCucgucguGAAAGCg -3'
miRNA:   3'- -UUUUUUCGGG-----CCu---CCCCGGG-------UUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 190212 0.7 0.893306
Target:  5'- uGAAcAGCagCGGcuacAGGGGCCCGAGAuGCa -3'
miRNA:   3'- uUUUuUCGg-GCC----UCCCCGGGUUUU-CG- -5'
29806 5' -53.2 NC_006273.1 + 113517 0.73 0.788723
Target:  5'- cGGGuuGCCCGG-GGGGCgCGcgGGCg -3'
miRNA:   3'- uUUUuuCGGGCCuCCCCGgGUuuUCG- -5'
29806 5' -53.2 NC_006273.1 + 210778 0.72 0.824299
Target:  5'- cGAAGAGCgCGGAGGccacaGGCaCCAGGAGg -3'
miRNA:   3'- uUUUUUCGgGCCUCC-----CCG-GGUUUUCg -5'
29806 5' -53.2 NC_006273.1 + 33219 0.71 0.841058
Target:  5'- ---uGGGCCCGGuAGcgcaccgaGGGCCCcGGGGCg -3'
miRNA:   3'- uuuuUUCGGGCC-UC--------CCCGGGuUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 174707 0.71 0.857046
Target:  5'- uAAGAAGCCaagGGGGuGGGCCUAuAGAGUc -3'
miRNA:   3'- uUUUUUCGGg--CCUC-CCCGGGU-UUUCG- -5'
29806 5' -53.2 NC_006273.1 + 189041 0.71 0.864734
Target:  5'- ----cAGCCgcgUGGuGGGGGCCCGGAccGGCg -3'
miRNA:   3'- uuuuuUCGG---GCC-UCCCCGGGUUU--UCG- -5'
29806 5' -53.2 NC_006273.1 + 94894 0.71 0.878751
Target:  5'- ----cGGuCCCGGAagguugggggcugGGGGCCCGgucaGGAGCu -3'
miRNA:   3'- uuuuuUC-GGGCCU-------------CCCCGGGU----UUUCG- -5'
29806 5' -53.2 NC_006273.1 + 8144 0.7 0.8865
Target:  5'- gGAGAGGGCCuguCGGAGauGGCCguGAGGCa -3'
miRNA:   3'- -UUUUUUCGG---GCCUCc-CCGGguUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 30172 0.7 0.8865
Target:  5'- ---cGAGCCCG--GGGGCCCGuc-GCa -3'
miRNA:   3'- uuuuUUCGGGCcuCCCCGGGUuuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.