miRNA display CGI


Results 41 - 60 of 66 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 5' -53.2 NC_006273.1 + 149427 0.66 0.979706
Target:  5'- -----uGCCCGauggcacGGGGGGCgacggccCCGAGGGCg -3'
miRNA:   3'- uuuuuuCGGGC-------CUCCCCG-------GGUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 19403 0.66 0.980145
Target:  5'- gAAAGAGGCCUGGuuacAGcGcGGCCgGcGAGCa -3'
miRNA:   3'- -UUUUUUCGGGCC----UC-C-CCGGgUuUUCG- -5'
29806 5' -53.2 NC_006273.1 + 140657 0.66 0.982238
Target:  5'- aAGGGGAGCUgGGuGGGGgaucCCCGGucGCc -3'
miRNA:   3'- -UUUUUUCGGgCCuCCCC----GGGUUuuCG- -5'
29806 5' -53.2 NC_006273.1 + 211712 0.66 0.98416
Target:  5'- ---cGGGCCUcuGGGGGCCgCAcGGAGCg -3'
miRNA:   3'- uuuuUUCGGGccUCCCCGG-GU-UUUCG- -5'
29806 5' -53.2 NC_006273.1 + 36757 0.66 0.985921
Target:  5'- ---cGGGCuCCGGcGGGuGGCCU--GAGCa -3'
miRNA:   3'- uuuuUUCG-GGCC-UCC-CCGGGuuUUCG- -5'
29806 5' -53.2 NC_006273.1 + 140836 0.68 0.943848
Target:  5'- --cGGAGCCCGGGgaggagcgggguGGGGgUgGGAAGCc -3'
miRNA:   3'- uuuUUUCGGGCCU------------CCCCgGgUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 117814 0.69 0.939197
Target:  5'- --cGAAGCagaaGGAGGGGCCgCuacGGCg -3'
miRNA:   3'- uuuUUUCGgg--CCUCCCCGG-GuuuUCG- -5'
29806 5' -53.2 NC_006273.1 + 8238 0.69 0.939197
Target:  5'- --uGGGGCCgGGAcGGGGUgggaCGAGAGCc -3'
miRNA:   3'- uuuUUUCGGgCCU-CCCCGg---GUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 156208 0.77 0.578142
Target:  5'- gAGGAGAGCagcacguuaCCGGAGGGGCUCGAAacaucaucagggGGCu -3'
miRNA:   3'- -UUUUUUCG---------GGCCUCCCCGGGUUU------------UCG- -5'
29806 5' -53.2 NC_006273.1 + 140164 0.76 0.61919
Target:  5'- ----cAGCCUGGuGGGGUCC-GAGGCg -3'
miRNA:   3'- uuuuuUCGGGCCuCCCCGGGuUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 143949 0.73 0.750862
Target:  5'- ----uAGCgCCGGuGGGGCCCGc-GGCu -3'
miRNA:   3'- uuuuuUCG-GGCCuCCCCGGGUuuUCG- -5'
29806 5' -53.2 NC_006273.1 + 182781 0.73 0.788723
Target:  5'- cGAGAAGCCUGcGAGGcucucaaaaaGGCCCugcgGAGGCa -3'
miRNA:   3'- uUUUUUCGGGC-CUCC----------CCGGGu---UUUCG- -5'
29806 5' -53.2 NC_006273.1 + 162978 0.72 0.797854
Target:  5'- cGAGAcGCgCGGAGGaGGCUCGAcGGCg -3'
miRNA:   3'- uUUUUuCGgGCCUCC-CCGGGUUuUCG- -5'
29806 5' -53.2 NC_006273.1 + 117230 0.71 0.841058
Target:  5'- gGAAGAGGCCgCaGAGGGGagagccgCCGAAAGUa -3'
miRNA:   3'- -UUUUUUCGG-GcCUCCCCg------GGUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 148654 0.71 0.849151
Target:  5'- ----uGGCgCCGGAGGccGGCCUGGAGGUc -3'
miRNA:   3'- uuuuuUCG-GGCCUCC--CCGGGUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 145850 0.7 0.892636
Target:  5'- --cGAGGCCCuggguuucguuucGGAGGuGcGCCuCAAGAGCa -3'
miRNA:   3'- uuuUUUCGGG-------------CCUCC-C-CGG-GUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 149579 0.7 0.89988
Target:  5'- ---cGGGCCCguGGAGGaGGCaaGAAAGCu -3'
miRNA:   3'- uuuuUUCGGG--CCUCC-CCGggUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 165443 0.7 0.89988
Target:  5'- cAGAAAGCCUugaccuguucggGGAGGuGGUCgGGGGGCa -3'
miRNA:   3'- uUUUUUCGGG------------CCUCC-CCGGgUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 140987 0.7 0.906218
Target:  5'- --cGAGGUCCGGAGcGGGCCgCGcccGGUg -3'
miRNA:   3'- uuuUUUCGGGCCUC-CCCGG-GUuu-UCG- -5'
29806 5' -53.2 NC_006273.1 + 89386 0.69 0.934305
Target:  5'- ----uAGCCaccaccuggaCGGGGGGGaCCGGGGGCg -3'
miRNA:   3'- uuuuuUCGG----------GCCUCCCCgGGUUUUCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.