miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 5' -53.2 NC_006273.1 + 140613 1.09 0.007137
Target:  5'- aAAAAAAGCCCGGAGGGGCCCAAAAGCc -3'
miRNA:   3'- -UUUUUUCGGGCCUCCCCGGGUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 186643 0.68 0.952436
Target:  5'- ---cGAGCUCGGAcGGGCUCGuu-GCa -3'
miRNA:   3'- uuuuUUCGGGCCUcCCCGGGUuuuCG- -5'
29806 5' -53.2 NC_006273.1 + 174960 0.68 0.963585
Target:  5'- ---cGAGCUCgaGGAGGGGCCgcugccCGGGGGUg -3'
miRNA:   3'- uuuuUUCGGG--CCUCCCCGG------GUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 215743 0.66 0.987527
Target:  5'- cAAGAAGCgaCCGcAGuGGGCCCAc-AGCa -3'
miRNA:   3'- uUUUUUCG--GGCcUC-CCCGGGUuuUCG- -5'
29806 5' -53.2 NC_006273.1 + 182781 0.73 0.788723
Target:  5'- cGAGAAGCCUGcGAGGcucucaaaaaGGCCCugcgGAGGCa -3'
miRNA:   3'- uUUUUUCGGGC-CUCC----------CCGGGu---UUUCG- -5'
29806 5' -53.2 NC_006273.1 + 162978 0.72 0.797854
Target:  5'- cGAGAcGCgCGGAGGaGGCUCGAcGGCg -3'
miRNA:   3'- uUUUUuCGgGCCUCC-CCGGGUUuUCG- -5'
29806 5' -53.2 NC_006273.1 + 148654 0.71 0.849151
Target:  5'- ----uGGCgCCGGAGGccGGCCUGGAGGUc -3'
miRNA:   3'- uuuuuUCG-GGCCUCC--CCGGGUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 145850 0.7 0.892636
Target:  5'- --cGAGGCCCuggguuucguuucGGAGGuGcGCCuCAAGAGCa -3'
miRNA:   3'- uuuUUUCGGG-------------CCUCC-C-CGG-GUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 140987 0.7 0.906218
Target:  5'- --cGAGGUCCGGAGcGGGCCgCGcccGGUg -3'
miRNA:   3'- uuuUUUCGGGCCUC-CCCGG-GUuu-UCG- -5'
29806 5' -53.2 NC_006273.1 + 83411 0.68 0.952436
Target:  5'- ----cGGCCCGGcGGcGCCCG--AGCg -3'
miRNA:   3'- uuuuuUCGGGCCuCCcCGGGUuuUCG- -5'
29806 5' -53.2 NC_006273.1 + 8238 0.69 0.939197
Target:  5'- --uGGGGCCgGGAcGGGGUgggaCGAGAGCc -3'
miRNA:   3'- uuuUUUCGGgCCU-CCCCGg---GUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 165443 0.7 0.89988
Target:  5'- cAGAAAGCCUugaccuguucggGGAGGuGGUCgGGGGGCa -3'
miRNA:   3'- uUUUUUCGGG------------CCUCC-CCGGgUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 156208 0.77 0.578142
Target:  5'- gAGGAGAGCagcacguuaCCGGAGGGGCUCGAAacaucaucagggGGCu -3'
miRNA:   3'- -UUUUUUCG---------GGCCUCCCCGGGUUU------------UCG- -5'
29806 5' -53.2 NC_006273.1 + 117814 0.69 0.939197
Target:  5'- --cGAAGCagaaGGAGGGGCCgCuacGGCg -3'
miRNA:   3'- uuuUUUCGgg--CCUCCCCGG-GuuuUCG- -5'
29806 5' -53.2 NC_006273.1 + 140164 0.76 0.61919
Target:  5'- ----cAGCCUGGuGGGGUCC-GAGGCg -3'
miRNA:   3'- uuuuuUCGGGCCuCCCCGGGuUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 149579 0.7 0.89988
Target:  5'- ---cGGGCCCguGGAGGaGGCaaGAAAGCu -3'
miRNA:   3'- uuuuUUCGGG--CCUCC-CCGggUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 140836 0.68 0.943848
Target:  5'- --cGGAGCCCGGGgaggagcgggguGGGGgUgGGAAGCc -3'
miRNA:   3'- uuuUUUCGGGCCU------------CCCCgGgUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 78676 0.68 0.955996
Target:  5'- gAGAAGGGgCCGGGGuccgcGGGCaccgccgCCGGAGGCg -3'
miRNA:   3'- -UUUUUUCgGGCCUC-----CCCG-------GGUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 143949 0.73 0.750862
Target:  5'- ----uAGCgCCGGuGGGGCCCGc-GGCu -3'
miRNA:   3'- uuuuuUCG-GGCCuCCCCGGGUuuUCG- -5'
29806 5' -53.2 NC_006273.1 + 117230 0.71 0.841058
Target:  5'- gGAAGAGGCCgCaGAGGGGagagccgCCGAAAGUa -3'
miRNA:   3'- -UUUUUUCGG-GcCUCCCCg------GGUUUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.