miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 5' -53.2 NC_006273.1 + 83411 0.68 0.952436
Target:  5'- ----cGGCCCGGcGGcGCCCG--AGCg -3'
miRNA:   3'- uuuuuUCGGGCCuCCcCGGGUuuUCG- -5'
29806 5' -53.2 NC_006273.1 + 89386 0.69 0.934305
Target:  5'- ----uAGCCaccaccuggaCGGGGGGGaCCGGGGGCg -3'
miRNA:   3'- uuuuuUCGG----------GCCUCCCCgGGUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 211712 0.66 0.98416
Target:  5'- ---cGGGCCUcuGGGGGCCgCAcGGAGCg -3'
miRNA:   3'- uuuuUUCGGGccUCCCCGG-GU-UUUCG- -5'
29806 5' -53.2 NC_006273.1 + 174960 0.68 0.963585
Target:  5'- ---cGAGCUCgaGGAGGGGCCgcugccCGGGGGUg -3'
miRNA:   3'- uuuuUUCGGG--CCUCCCCGG------GUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 140987 0.7 0.906218
Target:  5'- --cGAGGUCCGGAGcGGGCCgCGcccGGUg -3'
miRNA:   3'- uuuUUUCGGGCCUC-CCCGG-GUuu-UCG- -5'
29806 5' -53.2 NC_006273.1 + 140657 0.66 0.982238
Target:  5'- aAGGGGAGCUgGGuGGGGgaucCCCGGucGCc -3'
miRNA:   3'- -UUUUUUCGGgCCuCCCC----GGGUUuuCG- -5'
29806 5' -53.2 NC_006273.1 + 165443 0.7 0.89988
Target:  5'- cAGAAAGCCUugaccuguucggGGAGGuGGUCgGGGGGCa -3'
miRNA:   3'- uUUUUUCGGG------------CCUCC-CCGGgUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 149579 0.7 0.89988
Target:  5'- ---cGGGCCCguGGAGGaGGCaaGAAAGCu -3'
miRNA:   3'- uuuuUUCGGG--CCUCC-CCGggUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 181836 0.68 0.963585
Target:  5'- -uAGGAGCCUGGGGGuucuGCCCAAc--- -3'
miRNA:   3'- uuUUUUCGGGCCUCCc---CGGGUUuucg -5'
29806 5' -53.2 NC_006273.1 + 140791 0.66 0.985921
Target:  5'- cGGGAAGCCggCGGAGGucgCCGGGAGCa -3'
miRNA:   3'- uUUUUUCGG--GCCUCCccgGGUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 140836 0.68 0.943848
Target:  5'- --cGGAGCCCGGGgaggagcgggguGGGGgUgGGAAGCc -3'
miRNA:   3'- uuuUUUCGGGCCU------------CCCCgGgUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 8238 0.69 0.939197
Target:  5'- --uGGGGCCgGGAcGGGGUgggaCGAGAGCc -3'
miRNA:   3'- uuuUUUCGGgCCU-CCCCGg---GUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 122415 0.67 0.975417
Target:  5'- --cGGAGUCCGGcGGaucgcGGCCCucccAAAGCg -3'
miRNA:   3'- uuuUUUCGGGCCuCC-----CCGGGu---UUUCG- -5'
29806 5' -53.2 NC_006273.1 + 36757 0.66 0.985921
Target:  5'- ---cGGGCuCCGGcGGGuGGCCU--GAGCa -3'
miRNA:   3'- uuuuUUCG-GGCC-UCC-CCGGGuuUUCG- -5'
29806 5' -53.2 NC_006273.1 + 8377 0.68 0.952436
Target:  5'- uAGAGAcauGGUuuGGGGGGGaCCGGcGGCg -3'
miRNA:   3'- -UUUUU---UCGggCCUCCCCgGGUUuUCG- -5'
29806 5' -53.2 NC_006273.1 + 42030 0.69 0.929172
Target:  5'- cAAAGAGCCUccgGGAGGcGCCCGguuuacgugucgGGGGCg -3'
miRNA:   3'- uUUUUUCGGG---CCUCCcCGGGU------------UUUCG- -5'
29806 5' -53.2 NC_006273.1 + 195821 0.66 0.985921
Target:  5'- ----cGGUCgCGGccgcGGGGCCgGAGGGCc -3'
miRNA:   3'- uuuuuUCGG-GCCu---CCCCGGgUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 94894 0.71 0.878751
Target:  5'- ----cGGuCCCGGAagguugggggcugGGGGCCCGgucaGGAGCu -3'
miRNA:   3'- uuuuuUC-GGGCCU-------------CCCCGGGU----UUUCG- -5'
29806 5' -53.2 NC_006273.1 + 7734 0.66 0.98416
Target:  5'- gGAGAGAGaagaGGAgcGGGGCguCCGAAGGCg -3'
miRNA:   3'- -UUUUUUCggg-CCU--CCCCG--GGUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 101845 0.66 0.98416
Target:  5'- ----cGGCuCCaGAGGcuGGCCCAGAGcGCg -3'
miRNA:   3'- uuuuuUCG-GGcCUCC--CCGGGUUUU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.