miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29807 3' -53.8 NC_006273.1 + 15949 0.66 0.993768
Target:  5'- cCCGU-GAUUCugGaauccguaucuacGUG-UCCGGGCCa -3'
miRNA:   3'- -GGCAcCUAAGugC-------------CACaAGGCCUGGg -5'
29807 3' -53.8 NC_006273.1 + 1415 0.66 0.992966
Target:  5'- aCCGUGGug-CACgaGGUGgaccCCGcggccGACCCg -3'
miRNA:   3'- -GGCACCuaaGUG--CCACaa--GGC-----CUGGG- -5'
29807 3' -53.8 NC_006273.1 + 196308 0.66 0.992966
Target:  5'- aCCGUGGug-CACgaGGUGgaccCCGcggccGACCCg -3'
miRNA:   3'- -GGCACCuaaGUG--CCACaa--GGC-----CUGGG- -5'
29807 3' -53.8 NC_006273.1 + 198069 0.66 0.992966
Target:  5'- cCUGUGGAUcgUCGCGGacugccggcaUG-UCCGG-CCg -3'
miRNA:   3'- -GGCACCUA--AGUGCC----------ACaAGGCCuGGg -5'
29807 3' -53.8 NC_006273.1 + 61019 0.66 0.992681
Target:  5'- gCGUGGGaucucCACGcgaaucucggguacGUGUUCCGGACa- -3'
miRNA:   3'- gGCACCUaa---GUGC--------------CACAAGGCCUGgg -5'
29807 3' -53.8 NC_006273.1 + 50213 0.66 0.992584
Target:  5'- gCCGUGGcuGUUCugGGUGcuguugagcugcCCGcGACUCc -3'
miRNA:   3'- -GGCACC--UAAGugCCACaa----------GGC-CUGGG- -5'
29807 3' -53.8 NC_006273.1 + 141028 0.66 0.989684
Target:  5'- cCCGgaUGGugcUCcaggGCGGUGggaCGGGCCCg -3'
miRNA:   3'- -GGC--ACCua-AG----UGCCACaagGCCUGGG- -5'
29807 3' -53.8 NC_006273.1 + 104663 0.67 0.988358
Target:  5'- aCCGcGG-UUUACGGgucgGUUCUcugucccaugGGACCCc -3'
miRNA:   3'- -GGCaCCuAAGUGCCa---CAAGG----------CCUGGG- -5'
29807 3' -53.8 NC_006273.1 + 29238 0.67 0.988358
Target:  5'- uCUGUGGAcccugCGCGGgaaccugUCCGuGCCCa -3'
miRNA:   3'- -GGCACCUaa---GUGCCaca----AGGCcUGGG- -5'
29807 3' -53.8 NC_006273.1 + 68522 0.67 0.988358
Target:  5'- gCCGUaccugucggcGGAgcgCACGGUGcgCUGGAUgCu -3'
miRNA:   3'- -GGCA----------CCUaa-GUGCCACaaGGCCUGgG- -5'
29807 3' -53.8 NC_006273.1 + 221783 0.67 0.987792
Target:  5'- gCGUGGGgcggcccuccagCACGGcGgcCCGGGCCg -3'
miRNA:   3'- gGCACCUaa----------GUGCCaCaaGGCCUGGg -5'
29807 3' -53.8 NC_006273.1 + 84742 0.67 0.986903
Target:  5'- gUCGUGGucUCuuGcGUGUUgCgCGGACCCu -3'
miRNA:   3'- -GGCACCuaAGugC-CACAA-G-GCCUGGG- -5'
29807 3' -53.8 NC_006273.1 + 89348 0.67 0.986903
Target:  5'- gCGcGGAgucCugGGUGUgUCGGGCCg -3'
miRNA:   3'- gGCaCCUaa-GugCCACAaGGCCUGGg -5'
29807 3' -53.8 NC_006273.1 + 202163 0.67 0.986903
Target:  5'- cCCG-GGGcccuCGGUGcgcuaCCGGGCCCa -3'
miRNA:   3'- -GGCaCCUaaguGCCACaa---GGCCUGGG- -5'
29807 3' -53.8 NC_006273.1 + 30611 0.67 0.983758
Target:  5'- aCGUcGGGacgauauaaagaggCACGGUGUUUCGGcuCCCg -3'
miRNA:   3'- gGCA-CCUaa------------GUGCCACAAGGCCu-GGG- -5'
29807 3' -53.8 NC_006273.1 + 60992 0.67 0.983396
Target:  5'- aUGcUGGAggugagCACGuagaugccgggacGUGUUUCGGGCCCg -3'
miRNA:   3'- gGC-ACCUaa----GUGC-------------CACAAGGCCUGGG- -5'
29807 3' -53.8 NC_006273.1 + 73917 0.67 0.981692
Target:  5'- gCUGUGacugcUUACGGUgacgugGUUCCGGACCg -3'
miRNA:   3'- -GGCACcua--AGUGCCA------CAAGGCCUGGg -5'
29807 3' -53.8 NC_006273.1 + 129843 0.68 0.977442
Target:  5'- -aGUGGAgggcCACGGUGaacaUCUGGuACCUa -3'
miRNA:   3'- ggCACCUaa--GUGCCACa---AGGCC-UGGG- -5'
29807 3' -53.8 NC_006273.1 + 144819 0.68 0.977442
Target:  5'- gCGUGGAguUUCGCGGUGaa-CGcGAaacCCCg -3'
miRNA:   3'- gGCACCU--AAGUGCCACaagGC-CU---GGG- -5'
29807 3' -53.8 NC_006273.1 + 203986 0.68 0.972505
Target:  5'- cCCGUGaaguccuuccGGUggCGCGGUGccgaccUCGGACCCa -3'
miRNA:   3'- -GGCAC----------CUAa-GUGCCACaa----GGCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.