Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29807 | 3' | -53.8 | NC_006273.1 | + | 20568 | 0.68 | 0.969764 |
Target: 5'- uUGUGGcgUCGCacguGG-GUUCCGGgacagaACCCg -3' miRNA: 3'- gGCACCuaAGUG----CCaCAAGGCC------UGGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 149558 | 0.68 | 0.966833 |
Target: 5'- ---aGGAauaACGGUGgcggcggCCGGGCCCg -3' miRNA: 3'- ggcaCCUaagUGCCACaa-----GGCCUGGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 94384 | 0.69 | 0.962401 |
Target: 5'- gCCGUGGGccgggcaccgggCGCGGcccGcUCCGGACCUc -3' miRNA: 3'- -GGCACCUaa----------GUGCCa--CaAGGCCUGGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 118329 | 0.69 | 0.960381 |
Target: 5'- gCGUcGGGUUCugagGCGGcaacggCCGGGCCCu -3' miRNA: 3'- gGCA-CCUAAG----UGCCacaa--GGCCUGGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 71597 | 0.69 | 0.95685 |
Target: 5'- aCCGUGGGUcccggCGCGGUGUUagacaUGGGgCa -3' miRNA: 3'- -GGCACCUAa----GUGCCACAAg----GCCUgGg -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 34187 | 0.69 | 0.947101 |
Target: 5'- gCGUGGAaaaaaacggcggCGCGGUGcgUCCGGuacuugacgggcaACCCg -3' miRNA: 3'- gGCACCUaa----------GUGCCACa-AGGCC-------------UGGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 160510 | 0.69 | 0.95685 |
Target: 5'- aCGUGGAUUCucCGGUGccgaCGcGACCg -3' miRNA: 3'- gGCACCUAAGu-GCCACaag-GC-CUGGg -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 214597 | 0.69 | 0.963707 |
Target: 5'- aCCGUGGcgUUACuagGGUGUUCguuGCCCa -3' miRNA: 3'- -GGCACCuaAGUG---CCACAAGgccUGGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 152897 | 0.71 | 0.920859 |
Target: 5'- gCCGUGGGUggCGCGGUGgccUCCGuGGUCg -3' miRNA: 3'- -GGCACCUAa-GUGCCACa--AGGC-CUGGg -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 82201 | 0.71 | 0.920859 |
Target: 5'- gCCGUGGAUgcaUCagacgACGGUGgucCCGGuCCUu -3' miRNA: 3'- -GGCACCUA---AG-----UGCCACaa-GGCCuGGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 126991 | 0.71 | 0.920859 |
Target: 5'- aCGUGGAgacCGCGGUGgcggCCGGcAUCa -3' miRNA: 3'- gGCACCUaa-GUGCCACaa--GGCC-UGGg -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 139612 | 0.71 | 0.89758 |
Target: 5'- gCCGguugGGGUgcggucaaACGGUGUuuuacaguUUCGGGCCCa -3' miRNA: 3'- -GGCa---CCUAag------UGCCACA--------AGGCCUGGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 40738 | 0.73 | 0.824181 |
Target: 5'- gCGUGGcgUCccGCGGUGUUUuuuuucgCGGACCa -3' miRNA: 3'- gGCACCuaAG--UGCCACAAG-------GCCUGGg -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 173700 | 0.73 | 0.84876 |
Target: 5'- gUCGUGGccuuggUCACgGGUGUcUCGGGCCUa -3' miRNA: 3'- -GGCACCua----AGUG-CCACAaGGCCUGGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 800 | 0.73 | 0.824181 |
Target: 5'- gCGUGGcgUCccGCGGUGUUUuuuuucgCGGACCa -3' miRNA: 3'- gGCACCuaAG--UGCCACAAG-------GCCUGGg -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 39434 | 0.74 | 0.791075 |
Target: 5'- cCCGcgGGGUUCuaccCGGUGgacgCCGuGGCCCg -3' miRNA: 3'- -GGCa-CCUAAGu---GCCACaa--GGC-CUGGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 64823 | 0.74 | 0.799775 |
Target: 5'- gCCGccUGGAgUCGCGGUucggCCGGACCg -3' miRNA: 3'- -GGC--ACCUaAGUGCCAcaa-GGCCUGGg -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 234327 | 0.74 | 0.791075 |
Target: 5'- cCCGcgGGGUUCuaccCGGUGgacgCCGuGGCCCg -3' miRNA: 3'- -GGCa-CCUAAGu---GCCACaa--GGC-CUGGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 139904 | 1.13 | 0.005322 |
Target: 5'- cCCGUGGAUUCACGGUGUUCCGGACCCc -3' miRNA: 3'- -GGCACCUAAGUGCCACAAGGCCUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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