miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29807 3' -53.8 NC_006273.1 + 196308 0.66 0.992966
Target:  5'- aCCGUGGug-CACgaGGUGgaccCCGcggccGACCCg -3'
miRNA:   3'- -GGCACCuaaGUG--CCACaa--GGC-----CUGGG- -5'
29807 3' -53.8 NC_006273.1 + 203986 0.68 0.972505
Target:  5'- cCCGUGaaguccuuccGGUggCGCGGUGccgaccUCGGACCCa -3'
miRNA:   3'- -GGCAC----------CUAa-GUGCCACaa----GGCCUGGG- -5'
29807 3' -53.8 NC_006273.1 + 129843 0.68 0.977442
Target:  5'- -aGUGGAgggcCACGGUGaacaUCUGGuACCUa -3'
miRNA:   3'- ggCACCUaa--GUGCCACa---AGGCC-UGGG- -5'
29807 3' -53.8 NC_006273.1 + 144819 0.68 0.977442
Target:  5'- gCGUGGAguUUCGCGGUGaa-CGcGAaacCCCg -3'
miRNA:   3'- gGCACCU--AAGUGCCACaagGC-CU---GGG- -5'
29807 3' -53.8 NC_006273.1 + 73917 0.67 0.981692
Target:  5'- gCUGUGacugcUUACGGUgacgugGUUCCGGACCg -3'
miRNA:   3'- -GGCACcua--AGUGCCA------CAAGGCCUGGg -5'
29807 3' -53.8 NC_006273.1 + 60992 0.67 0.983396
Target:  5'- aUGcUGGAggugagCACGuagaugccgggacGUGUUUCGGGCCCg -3'
miRNA:   3'- gGC-ACCUaa----GUGC-------------CACAAGGCCUGGG- -5'
29807 3' -53.8 NC_006273.1 + 84742 0.67 0.986903
Target:  5'- gUCGUGGucUCuuGcGUGUUgCgCGGACCCu -3'
miRNA:   3'- -GGCACCuaAGugC-CACAA-G-GCCUGGG- -5'
29807 3' -53.8 NC_006273.1 + 221783 0.67 0.987792
Target:  5'- gCGUGGGgcggcccuccagCACGGcGgcCCGGGCCg -3'
miRNA:   3'- gGCACCUaa----------GUGCCaCaaGGCCUGGg -5'
29807 3' -53.8 NC_006273.1 + 68522 0.67 0.988358
Target:  5'- gCCGUaccugucggcGGAgcgCACGGUGcgCUGGAUgCu -3'
miRNA:   3'- -GGCA----------CCUaa-GUGCCACaaGGCCUGgG- -5'
29807 3' -53.8 NC_006273.1 + 20568 0.68 0.969764
Target:  5'- uUGUGGcgUCGCacguGG-GUUCCGGgacagaACCCg -3'
miRNA:   3'- gGCACCuaAGUG----CCaCAAGGCC------UGGG- -5'
29807 3' -53.8 NC_006273.1 + 214597 0.69 0.963707
Target:  5'- aCCGUGGcgUUACuagGGUGUUCguuGCCCa -3'
miRNA:   3'- -GGCACCuaAGUG---CCACAAGgccUGGG- -5'
29807 3' -53.8 NC_006273.1 + 94384 0.69 0.962401
Target:  5'- gCCGUGGGccgggcaccgggCGCGGcccGcUCCGGACCUc -3'
miRNA:   3'- -GGCACCUaa----------GUGCCa--CaAGGCCUGGG- -5'
29807 3' -53.8 NC_006273.1 + 64823 0.74 0.799775
Target:  5'- gCCGccUGGAgUCGCGGUucggCCGGACCg -3'
miRNA:   3'- -GGC--ACCUaAGUGCCAcaa-GGCCUGGg -5'
29807 3' -53.8 NC_006273.1 + 800 0.73 0.824181
Target:  5'- gCGUGGcgUCccGCGGUGUUUuuuuucgCGGACCa -3'
miRNA:   3'- gGCACCuaAG--UGCCACAAG-------GCCUGGg -5'
29807 3' -53.8 NC_006273.1 + 173700 0.73 0.84876
Target:  5'- gUCGUGGccuuggUCACgGGUGUcUCGGGCCUa -3'
miRNA:   3'- -GGCACCua----AGUG-CCACAaGGCCUGGG- -5'
29807 3' -53.8 NC_006273.1 + 82201 0.71 0.920859
Target:  5'- gCCGUGGAUgcaUCagacgACGGUGgucCCGGuCCUu -3'
miRNA:   3'- -GGCACCUA---AG-----UGCCACaa-GGCCuGGG- -5'
29807 3' -53.8 NC_006273.1 + 126991 0.71 0.920859
Target:  5'- aCGUGGAgacCGCGGUGgcggCCGGcAUCa -3'
miRNA:   3'- gGCACCUaa-GUGCCACaa--GGCC-UGGg -5'
29807 3' -53.8 NC_006273.1 + 34187 0.69 0.947101
Target:  5'- gCGUGGAaaaaaacggcggCGCGGUGcgUCCGGuacuugacgggcaACCCg -3'
miRNA:   3'- gGCACCUaa----------GUGCCACa-AGGCC-------------UGGG- -5'
29807 3' -53.8 NC_006273.1 + 71597 0.69 0.95685
Target:  5'- aCCGUGGGUcccggCGCGGUGUUagacaUGGGgCa -3'
miRNA:   3'- -GGCACCUAa----GUGCCACAAg----GCCUgGg -5'
29807 3' -53.8 NC_006273.1 + 118329 0.69 0.960381
Target:  5'- gCGUcGGGUUCugagGCGGcaacggCCGGGCCCu -3'
miRNA:   3'- gGCA-CCUAAG----UGCCacaa--GGCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.