Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29807 | 3' | -53.8 | NC_006273.1 | + | 118329 | 0.69 | 0.960381 |
Target: 5'- gCGUcGGGUUCugagGCGGcaacggCCGGGCCCu -3' miRNA: 3'- gGCA-CCUAAG----UGCCacaa--GGCCUGGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 94384 | 0.69 | 0.962401 |
Target: 5'- gCCGUGGGccgggcaccgggCGCGGcccGcUCCGGACCUc -3' miRNA: 3'- -GGCACCUaa----------GUGCCa--CaAGGCCUGGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 202163 | 0.67 | 0.986903 |
Target: 5'- cCCG-GGGcccuCGGUGcgcuaCCGGGCCCa -3' miRNA: 3'- -GGCaCCUaaguGCCACaa---GGCCUGGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 29238 | 0.67 | 0.988358 |
Target: 5'- uCUGUGGAcccugCGCGGgaaccugUCCGuGCCCa -3' miRNA: 3'- -GGCACCUaa---GUGCCaca----AGGCcUGGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 104663 | 0.67 | 0.988358 |
Target: 5'- aCCGcGG-UUUACGGgucgGUUCUcugucccaugGGACCCc -3' miRNA: 3'- -GGCaCCuAAGUGCCa---CAAGG----------CCUGGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 141028 | 0.66 | 0.989684 |
Target: 5'- cCCGgaUGGugcUCcaggGCGGUGggaCGGGCCCg -3' miRNA: 3'- -GGC--ACCua-AG----UGCCACaagGCCUGGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 50213 | 0.66 | 0.992584 |
Target: 5'- gCCGUGGcuGUUCugGGUGcuguugagcugcCCGcGACUCc -3' miRNA: 3'- -GGCACC--UAAGugCCACaa----------GGC-CUGGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 61019 | 0.66 | 0.992681 |
Target: 5'- gCGUGGGaucucCACGcgaaucucggguacGUGUUCCGGACa- -3' miRNA: 3'- gGCACCUaa---GUGC--------------CACAAGGCCUGgg -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 1415 | 0.66 | 0.992966 |
Target: 5'- aCCGUGGug-CACgaGGUGgaccCCGcggccGACCCg -3' miRNA: 3'- -GGCACCuaaGUG--CCACaa--GGC-----CUGGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 89348 | 0.67 | 0.986903 |
Target: 5'- gCGcGGAgucCugGGUGUgUCGGGCCg -3' miRNA: 3'- gGCaCCUaa-GugCCACAaGGCCUGGg -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 30611 | 0.67 | 0.983758 |
Target: 5'- aCGUcGGGacgauauaaagaggCACGGUGUUUCGGcuCCCg -3' miRNA: 3'- gGCA-CCUaa------------GUGCCACAAGGCCu-GGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 149558 | 0.68 | 0.966833 |
Target: 5'- ---aGGAauaACGGUGgcggcggCCGGGCCCg -3' miRNA: 3'- ggcaCCUaagUGCCACaa-----GGCCUGGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 160510 | 0.69 | 0.95685 |
Target: 5'- aCGUGGAUUCucCGGUGccgaCGcGACCg -3' miRNA: 3'- gGCACCUAAGu-GCCACaag-GC-CUGGg -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 152897 | 0.71 | 0.920859 |
Target: 5'- gCCGUGGGUggCGCGGUGgccUCCGuGGUCg -3' miRNA: 3'- -GGCACCUAa-GUGCCACa--AGGC-CUGGg -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 139612 | 0.71 | 0.89758 |
Target: 5'- gCCGguugGGGUgcggucaaACGGUGUuuuacaguUUCGGGCCCa -3' miRNA: 3'- -GGCa---CCUAag------UGCCACA--------AGGCCUGGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 40738 | 0.73 | 0.824181 |
Target: 5'- gCGUGGcgUCccGCGGUGUUUuuuuucgCGGACCa -3' miRNA: 3'- gGCACCuaAG--UGCCACAAG-------GCCUGGg -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 39434 | 0.74 | 0.791075 |
Target: 5'- cCCGcgGGGUUCuaccCGGUGgacgCCGuGGCCCg -3' miRNA: 3'- -GGCa-CCUAAGu---GCCACaa--GGC-CUGGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 139904 | 1.13 | 0.005322 |
Target: 5'- cCCGUGGAUUCACGGUGUUCCGGACCCc -3' miRNA: 3'- -GGCACCUAAGUGCCACAAGGCCUGGG- -5' |
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29807 | 3' | -53.8 | NC_006273.1 | + | 198069 | 0.66 | 0.992966 |
Target: 5'- cCUGUGGAUcgUCGCGGacugccggcaUG-UCCGG-CCg -3' miRNA: 3'- -GGCACCUA--AGUGCC----------ACaAGGCCuGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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