miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29807 5' -56.5 NC_006273.1 + 217705 0.66 0.941443
Target:  5'- aGGGGGUGGG--ACGCGcc--GCCUACa -3'
miRNA:   3'- -UUCCCACCUuuUGCGCaccuCGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 192299 0.66 0.941443
Target:  5'- -cGuGUGGAAAACGCGUugcgucgcaGAGUCCGCc -3'
miRNA:   3'- uuCcCACCUUUUGCGCAc--------CUCGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 195495 0.66 0.940069
Target:  5'- uGGGGGUGcccugcgggaucacGAugGAACGCGUGcGcGUCCACa -3'
miRNA:   3'- -UUCCCAC--------------CU--UUUGCGCAC-CuCGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 35764 0.66 0.936783
Target:  5'- --cGG-GGAAGACGCGcuccggcccUGGAaGUCCACg -3'
miRNA:   3'- uucCCaCCUUUUGCGC---------ACCU-CGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 160540 0.66 0.936783
Target:  5'- --uGGUGaucgacGAGGACGC--GGAGCCCGCg -3'
miRNA:   3'- uucCCAC------CUUUUGCGcaCCUCGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 84868 0.66 0.931892
Target:  5'- cAGGGUGGAGGGCuuGgccacgGGAGCUguuggCACg -3'
miRNA:   3'- uUCCCACCUUUUGcgCa-----CCUCGG-----GUG- -5'
29807 5' -56.5 NC_006273.1 + 216866 0.66 0.92677
Target:  5'- aAAGGccGGcAGGCGCGcaggcccucgaUGGAGCCCAg -3'
miRNA:   3'- -UUCCcaCCuUUUGCGC-----------ACCUCGGGUg -5'
29807 5' -56.5 NC_006273.1 + 14016 0.66 0.92677
Target:  5'- cGGGGUGGcgGA-GCGgGGAGCgCCGa -3'
miRNA:   3'- uUCCCACCuuUUgCGCaCCUCG-GGUg -5'
29807 5' -56.5 NC_006273.1 + 156337 0.66 0.92677
Target:  5'- cAGGcucUGGu-GGCGCGUGG-GCCCAg -3'
miRNA:   3'- uUCCc--ACCuuUUGCGCACCuCGGGUg -5'
29807 5' -56.5 NC_006273.1 + 104488 0.66 0.915834
Target:  5'- cAGGG-GGAAGACGCaGUGGuccgucgguGUCUGCg -3'
miRNA:   3'- uUCCCaCCUUUUGCG-CACCu--------CGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 196844 0.67 0.91002
Target:  5'- cGGuGGcUGGGuuGCGCGgcGGGGCCgGCg -3'
miRNA:   3'- uUC-CC-ACCUuuUGCGCa-CCUCGGgUG- -5'
29807 5' -56.5 NC_006273.1 + 1952 0.67 0.91002
Target:  5'- cGGuGGcUGGGuuGCGCGgcGGGGCCgGCg -3'
miRNA:   3'- uUC-CC-ACCUuuUGCGCa-CCUCGGgUG- -5'
29807 5' -56.5 NC_006273.1 + 58376 0.67 0.903978
Target:  5'- cAGcGUGGAAGACGCcaagauuuuUGGAGCgCACa -3'
miRNA:   3'- uUCcCACCUUUUGCGc--------ACCUCGgGUG- -5'
29807 5' -56.5 NC_006273.1 + 26475 0.67 0.891218
Target:  5'- -cGGuGuUGGuucuGGGCGCGcUGGAGCUCACc -3'
miRNA:   3'- uuCC-C-ACCu---UUUGCGC-ACCUCGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 142300 0.67 0.887217
Target:  5'- -cGGcGUGGAcgcggugcucgaagaAAACGaCGUGGAGCUgCGCg -3'
miRNA:   3'- uuCC-CACCU---------------UUUGC-GCACCUCGG-GUG- -5'
29807 5' -56.5 NC_006273.1 + 112227 0.67 0.884507
Target:  5'- cGGcGGUGGcAAuGCGCGgcgGGGGCUgGCg -3'
miRNA:   3'- uUC-CCACC-UUuUGCGCa--CCUCGGgUG- -5'
29807 5' -56.5 NC_006273.1 + 187171 0.67 0.877579
Target:  5'- -cGGGUcccuGGAAGCGUGUGuGGGCCgGCc -3'
miRNA:   3'- uuCCCAc---CUUUUGCGCAC-CUCGGgUG- -5'
29807 5' -56.5 NC_006273.1 + 176780 0.67 0.877579
Target:  5'- -uGGGUaGAGAGCGCGcUGGAaaaacugcGUCCGCu -3'
miRNA:   3'- uuCCCAcCUUUUGCGC-ACCU--------CGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 99063 0.68 0.863094
Target:  5'- -uGGGaGGGAGAgGaCGUGGGGCUCGa -3'
miRNA:   3'- uuCCCaCCUUUUgC-GCACCUCGGGUg -5'
29807 5' -56.5 NC_006273.1 + 189866 0.68 0.839871
Target:  5'- -cGGG-GGGAGACGCGUcGGGCggaCCGCc -3'
miRNA:   3'- uuCCCaCCUUUUGCGCAcCUCG---GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.