Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29807 | 5' | -56.5 | NC_006273.1 | + | 176780 | 0.67 | 0.877579 |
Target: 5'- -uGGGUaGAGAGCGCGcUGGAaaaacugcGUCCGCu -3' miRNA: 3'- uuCCCAcCUUUUGCGC-ACCU--------CGGGUG- -5' |
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29807 | 5' | -56.5 | NC_006273.1 | + | 187171 | 0.67 | 0.877579 |
Target: 5'- -cGGGUcccuGGAAGCGUGUGuGGGCCgGCc -3' miRNA: 3'- uuCCCAc---CUUUUGCGCAC-CUCGGgUG- -5' |
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29807 | 5' | -56.5 | NC_006273.1 | + | 189866 | 0.68 | 0.839871 |
Target: 5'- -cGGG-GGGAGACGCGUcGGGCggaCCGCc -3' miRNA: 3'- uuCCCaCCUUUUGCGCAcCUCG---GGUG- -5' |
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29807 | 5' | -56.5 | NC_006273.1 | + | 192299 | 0.66 | 0.941443 |
Target: 5'- -cGuGUGGAAAACGCGUugcgucgcaGAGUCCGCc -3' miRNA: 3'- uuCcCACCUUUUGCGCAc--------CUCGGGUG- -5' |
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29807 | 5' | -56.5 | NC_006273.1 | + | 193627 | 0.71 | 0.713183 |
Target: 5'- gAAGGGUccgucgGGAcAGCGCGUGGGacgugaggccGCUCACg -3' miRNA: 3'- -UUCCCA------CCUuUUGCGCACCU----------CGGGUG- -5' |
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29807 | 5' | -56.5 | NC_006273.1 | + | 195495 | 0.66 | 0.940069 |
Target: 5'- uGGGGGUGcccugcgggaucacGAugGAACGCGUGcGcGUCCACa -3' miRNA: 3'- -UUCCCAC--------------CU--UUUGCGCAC-CuCGGGUG- -5' |
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29807 | 5' | -56.5 | NC_006273.1 | + | 196844 | 0.67 | 0.91002 |
Target: 5'- cGGuGGcUGGGuuGCGCGgcGGGGCCgGCg -3' miRNA: 3'- uUC-CC-ACCUuuUGCGCa-CCUCGGgUG- -5' |
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29807 | 5' | -56.5 | NC_006273.1 | + | 199041 | 0.69 | 0.821787 |
Target: 5'- cAGGGgcuucguGCGCGUGGGGCUgGCg -3' miRNA: 3'- uUCCCaccuuu-UGCGCACCUCGGgUG- -5' |
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29807 | 5' | -56.5 | NC_006273.1 | + | 216866 | 0.66 | 0.92677 |
Target: 5'- aAAGGccGGcAGGCGCGcaggcccucgaUGGAGCCCAg -3' miRNA: 3'- -UUCCcaCCuUUUGCGC-----------ACCUCGGGUg -5' |
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29807 | 5' | -56.5 | NC_006273.1 | + | 217705 | 0.66 | 0.941443 |
Target: 5'- aGGGGGUGGG--ACGCGcc--GCCUACa -3' miRNA: 3'- -UUCCCACCUuuUGCGCaccuCGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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