miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29807 5' -56.5 NC_006273.1 + 104488 0.66 0.915834
Target:  5'- cAGGG-GGAAGACGCaGUGGuccgucgguGUCUGCg -3'
miRNA:   3'- uUCCCaCCUUUUGCG-CACCu--------CGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 99063 0.68 0.863094
Target:  5'- -uGGGaGGGAGAgGaCGUGGGGCUCGa -3'
miRNA:   3'- uuCCCaCCUUUUgC-GCACCUCGGGUg -5'
29807 5' -56.5 NC_006273.1 + 84868 0.66 0.931892
Target:  5'- cAGGGUGGAGGGCuuGgccacgGGAGCUguuggCACg -3'
miRNA:   3'- uUCCCACCUUUUGcgCa-----CCUCGG-----GUG- -5'
29807 5' -56.5 NC_006273.1 + 66056 0.71 0.69247
Target:  5'- -uGGGUGGAGGagaugcuGCGCuacGUGGAaagcaaGCCCACu -3'
miRNA:   3'- uuCCCACCUUU-------UGCG---CACCU------CGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 58376 0.67 0.903978
Target:  5'- cAGcGUGGAAGACGCcaagauuuuUGGAGCgCACa -3'
miRNA:   3'- uUCcCACCUUUUGCGc--------ACCUCGgGUG- -5'
29807 5' -56.5 NC_006273.1 + 35764 0.66 0.936783
Target:  5'- --cGG-GGAAGACGCGcuccggcccUGGAaGUCCACg -3'
miRNA:   3'- uucCCaCCUUUUGCGC---------ACCU-CGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 26809 0.69 0.831756
Target:  5'- uGGGGUGGGGAcgggggACGCGguagGGAGCaaaACc -3'
miRNA:   3'- uUCCCACCUUU------UGCGCa---CCUCGgg-UG- -5'
29807 5' -56.5 NC_006273.1 + 26475 0.67 0.891218
Target:  5'- -cGGuGuUGGuucuGGGCGCGcUGGAGCUCACc -3'
miRNA:   3'- uuCC-C-ACCu---UUUGCGC-ACCUCGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 14016 0.66 0.92677
Target:  5'- cGGGGUGGcgGA-GCGgGGAGCgCCGa -3'
miRNA:   3'- uUCCCACCuuUUgCGCaCCUCG-GGUg -5'
29807 5' -56.5 NC_006273.1 + 1952 0.67 0.91002
Target:  5'- cGGuGGcUGGGuuGCGCGgcGGGGCCgGCg -3'
miRNA:   3'- uUC-CC-ACCUuuUGCGCa-CCUCGGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.