miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29807 5' -56.5 NC_006273.1 + 166149 0.72 0.62331
Target:  5'- -uGGGcgGGAGGACGCGUgGGAGCgCGg -3'
miRNA:   3'- uuCCCa-CCUUUUGCGCA-CCUCGgGUg -5'
29807 5' -56.5 NC_006273.1 + 217705 0.66 0.941443
Target:  5'- aGGGGGUGGG--ACGCGcc--GCCUACa -3'
miRNA:   3'- -UUCCCACCUuuUGCGCaccuCGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 192299 0.66 0.941443
Target:  5'- -cGuGUGGAAAACGCGUugcgucgcaGAGUCCGCc -3'
miRNA:   3'- uuCcCACCUUUUGCGCAc--------CUCGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 84868 0.66 0.931892
Target:  5'- cAGGGUGGAGGGCuuGgccacgGGAGCUguuggCACg -3'
miRNA:   3'- uUCCCACCUUUUGcgCa-----CCUCGG-----GUG- -5'
29807 5' -56.5 NC_006273.1 + 216866 0.66 0.92677
Target:  5'- aAAGGccGGcAGGCGCGcaggcccucgaUGGAGCCCAg -3'
miRNA:   3'- -UUCCcaCCuUUUGCGC-----------ACCUCGGGUg -5'
29807 5' -56.5 NC_006273.1 + 104488 0.66 0.915834
Target:  5'- cAGGG-GGAAGACGCaGUGGuccgucgguGUCUGCg -3'
miRNA:   3'- uUCCCaCCUUUUGCG-CACCu--------CGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 196844 0.67 0.91002
Target:  5'- cGGuGGcUGGGuuGCGCGgcGGGGCCgGCg -3'
miRNA:   3'- uUC-CC-ACCUuuUGCGCa-CCUCGGgUG- -5'
29807 5' -56.5 NC_006273.1 + 142300 0.67 0.887217
Target:  5'- -cGGcGUGGAcgcggugcucgaagaAAACGaCGUGGAGCUgCGCg -3'
miRNA:   3'- uuCC-CACCU---------------UUUGC-GCACCUCGG-GUG- -5'
29807 5' -56.5 NC_006273.1 + 112227 0.67 0.884507
Target:  5'- cGGcGGUGGcAAuGCGCGgcgGGGGCUgGCg -3'
miRNA:   3'- uUC-CCACC-UUuUGCGCa--CCUCGGgUG- -5'
29807 5' -56.5 NC_006273.1 + 117708 0.72 0.663529
Target:  5'- -cGGGUGGGGucgGCGUuacGAGCCCGCg -3'
miRNA:   3'- uuCCCACCUUuugCGCAc--CUCGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 66056 0.71 0.69247
Target:  5'- -uGGGUGGAGGagaugcuGCGCuacGUGGAaagcaaGCCCACu -3'
miRNA:   3'- uuCCCACCUUU-------UGCG---CACCU------CGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 26809 0.69 0.831756
Target:  5'- uGGGGUGGGGAcgggggACGCGguagGGAGCaaaACc -3'
miRNA:   3'- uUCCCACCUUU------UGCGCa---CCUCGgg-UG- -5'
29807 5' -56.5 NC_006273.1 + 140710 0.69 0.831756
Target:  5'- uGGuGGUGGAGugGugGCGgcggcGGGGCCgGCg -3'
miRNA:   3'- uUC-CCACCUU--UugCGCa----CCUCGGgUG- -5'
29807 5' -56.5 NC_006273.1 + 189866 0.68 0.839871
Target:  5'- -cGGG-GGGAGACGCGUcGGGCggaCCGCc -3'
miRNA:   3'- uuCCCaCCUUUUGCGCAcCUCG---GGUG- -5'
29807 5' -56.5 NC_006273.1 + 99063 0.68 0.863094
Target:  5'- -uGGGaGGGAGAgGaCGUGGGGCUCGa -3'
miRNA:   3'- uuCCCaCCUUUUgC-GCACCUCGGGUg -5'
29807 5' -56.5 NC_006273.1 + 195495 0.66 0.940069
Target:  5'- uGGGGGUGcccugcgggaucacGAugGAACGCGUGcGcGUCCACa -3'
miRNA:   3'- -UUCCCAC--------------CU--UUUGCGCAC-CuCGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 145578 0.73 0.583192
Target:  5'- cGGGGGUGGuggacGGGACGUGagcgGGGGCCCGa -3'
miRNA:   3'- -UUCCCACC-----UUUUGCGCa---CCUCGGGUg -5'
29807 5' -56.5 NC_006273.1 + 160322 0.72 0.643437
Target:  5'- -cGGG-GGAAgaaacGugGUGUGGGGCCCGu -3'
miRNA:   3'- uuCCCaCCUU-----UugCGCACCUCGGGUg -5'
29807 5' -56.5 NC_006273.1 + 193627 0.71 0.713183
Target:  5'- gAAGGGUccgucgGGAcAGCGCGUGGGacgugaggccGCUCACg -3'
miRNA:   3'- -UUCCCA------CCUuUUGCGCACCU----------CGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 199041 0.69 0.821787
Target:  5'- cAGGGgcuucguGCGCGUGGGGCUgGCg -3'
miRNA:   3'- uUCCCaccuuu-UGCGCACCUCGGgUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.