miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29807 5' -56.5 NC_006273.1 + 35764 0.66 0.936783
Target:  5'- --cGG-GGAAGACGCGcuccggcccUGGAaGUCCACg -3'
miRNA:   3'- uucCCaCCUUUUGCGC---------ACCU-CGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 26475 0.67 0.891218
Target:  5'- -cGGuGuUGGuucuGGGCGCGcUGGAGCUCACc -3'
miRNA:   3'- uuCC-C-ACCu---UUUGCGC-ACCUCGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 187171 0.67 0.877579
Target:  5'- -cGGGUcccuGGAAGCGUGUGuGGGCCgGCc -3'
miRNA:   3'- uuCCCAc---CUUUUGCGCAC-CUCGGgUG- -5'
29807 5' -56.5 NC_006273.1 + 176780 0.67 0.877579
Target:  5'- -uGGGUaGAGAGCGCGcUGGAaaaacugcGUCCGCu -3'
miRNA:   3'- uuCCCAcCUUUUGCGC-ACCU--------CGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 199041 0.69 0.821787
Target:  5'- cAGGGgcuucguGCGCGUGGGGCUgGCg -3'
miRNA:   3'- uUCCCaccuuu-UGCGCACCUCGGgUG- -5'
29807 5' -56.5 NC_006273.1 + 193627 0.71 0.713183
Target:  5'- gAAGGGUccgucgGGAcAGCGCGUGGGacgugaggccGCUCACg -3'
miRNA:   3'- -UUCCCA------CCUuUUGCGCACCU----------CGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 160322 0.72 0.643437
Target:  5'- -cGGG-GGAAgaaacGugGUGUGGGGCCCGu -3'
miRNA:   3'- uuCCCaCCUU-----UugCGCACCUCGGGUg -5'
29807 5' -56.5 NC_006273.1 + 145578 0.73 0.583192
Target:  5'- cGGGGGUGGuggacGGGACGUGagcgGGGGCCCGa -3'
miRNA:   3'- -UUCCCACC-----UUUUGCGCa---CCUCGGGUg -5'
29807 5' -56.5 NC_006273.1 + 139938 1.08 0.00421
Target:  5'- aAAGGGUGGAAAACGCGUGGAGCCCACg -3'
miRNA:   3'- -UUCCCACCUUUUGCGCACCUCGGGUG- -5'
29807 5' -56.5 NC_006273.1 + 195495 0.66 0.940069
Target:  5'- uGGGGGUGcccugcgggaucacGAugGAACGCGUGcGcGUCCACa -3'
miRNA:   3'- -UUCCCAC--------------CU--UUUGCGCAC-CuCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.