miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29808 3' -50.4 NC_006273.1 + 150102 0.66 0.999521
Target:  5'- uCCGU--UCUCUCcUCCGCCuUGcCGu -3'
miRNA:   3'- cGGUAaaAGAGAGcAGGCGGuACaGC- -5'
29808 3' -50.4 NC_006273.1 + 95065 0.66 0.999521
Target:  5'- cGCCGg---CUCUCgGUCCGCCuuaUCc -3'
miRNA:   3'- -CGGUaaaaGAGAG-CAGGCGGuacAGc -5'
29808 3' -50.4 NC_006273.1 + 27217 0.66 0.999511
Target:  5'- -aCGUcgUCUUUCGUCCcgaacgcGUCAUGUUGg -3'
miRNA:   3'- cgGUAaaAGAGAGCAGG-------CGGUACAGC- -5'
29808 3' -50.4 NC_006273.1 + 153893 0.66 0.999409
Target:  5'- cGCCGUgcucUUCUucgaCUCGcCCGaaaaCGUGUCGc -3'
miRNA:   3'- -CGGUAa---AAGA----GAGCaGGCg---GUACAGC- -5'
29808 3' -50.4 NC_006273.1 + 153549 0.66 0.999115
Target:  5'- uGUCAgc--CUCUCacgGUCCGCUAUGUUu -3'
miRNA:   3'- -CGGUaaaaGAGAG---CAGGCGGUACAGc -5'
29808 3' -50.4 NC_006273.1 + 117347 0.66 0.998906
Target:  5'- cGCCGUcgcUUUCUCccUCGgagCCGgcagaggcggcguCCAUGUCGc -3'
miRNA:   3'- -CGGUA---AAAGAG--AGCa--GGC-------------GGUACAGC- -5'
29808 3' -50.4 NC_006273.1 + 142238 0.67 0.998705
Target:  5'- cGCCcgUUg----CGUCCGCCguugGUGUCGc -3'
miRNA:   3'- -CGGuaAAagagaGCAGGCGG----UACAGC- -5'
29808 3' -50.4 NC_006273.1 + 181363 0.67 0.998444
Target:  5'- cGCCGgcgugacgUCcgCUCacgGUCCGCUAUGUCc -3'
miRNA:   3'- -CGGUaaa-----AGa-GAG---CAGGCGGUACAGc -5'
29808 3' -50.4 NC_006273.1 + 194652 0.67 0.997791
Target:  5'- aGCCGUcagcCUCggCGUCCGUUuUGUCGc -3'
miRNA:   3'- -CGGUAaaa-GAGa-GCAGGCGGuACAGC- -5'
29808 3' -50.4 NC_006273.1 + 61561 0.68 0.99433
Target:  5'- uUCAUUgUC-CUCGUCgGCCggGUCGc -3'
miRNA:   3'- cGGUAAaAGaGAGCAGgCGGuaCAGC- -5'
29808 3' -50.4 NC_006273.1 + 122977 0.68 0.99433
Target:  5'- uCCAg--UCcCUCGUCCGCCGcGcCGg -3'
miRNA:   3'- cGGUaaaAGaGAGCAGGCGGUaCaGC- -5'
29808 3' -50.4 NC_006273.1 + 216070 0.69 0.991411
Target:  5'- cGCUcg-UUCcCUCGaCCGUCGUGUCGu -3'
miRNA:   3'- -CGGuaaAAGaGAGCaGGCGGUACAGC- -5'
29808 3' -50.4 NC_006273.1 + 17177 0.69 0.99021
Target:  5'- cGCCAUgc-CggUCGUCCGCC--GUCGg -3'
miRNA:   3'- -CGGUAaaaGagAGCAGGCGGuaCAGC- -5'
29808 3' -50.4 NC_006273.1 + 117158 0.7 0.985806
Target:  5'- uGCCGUgggugUUUCUCcUCCGCCAcucGUCa -3'
miRNA:   3'- -CGGUAaa---AGAGAGcAGGCGGUa--CAGc -5'
29808 3' -50.4 NC_006273.1 + 212399 0.7 0.984043
Target:  5'- cGCCG---UCgaugCGUCCGCCGUGUUu -3'
miRNA:   3'- -CGGUaaaAGaga-GCAGGCGGUACAGc -5'
29808 3' -50.4 NC_006273.1 + 151243 0.71 0.972652
Target:  5'- cGCCGc--UC-CUCGUCUGCCGUGaUCa -3'
miRNA:   3'- -CGGUaaaAGaGAGCAGGCGGUAC-AGc -5'
29808 3' -50.4 NC_006273.1 + 131240 0.74 0.918266
Target:  5'- gGCCGcg--CUCUCGUCCaucGCCGcGUCGg -3'
miRNA:   3'- -CGGUaaaaGAGAGCAGG---CGGUaCAGC- -5'
29808 3' -50.4 NC_006273.1 + 138699 0.79 0.702533
Target:  5'- cGCCGUg--CUCUUGgcgCCGCgGUGUCGa -3'
miRNA:   3'- -CGGUAaaaGAGAGCa--GGCGgUACAGC- -5'
29808 3' -50.4 NC_006273.1 + 139530 1.13 0.009406
Target:  5'- cGCCAUUUUCUCUCGUCCGCCAUGUCGg -3'
miRNA:   3'- -CGGUAAAAGAGAGCAGGCGGUACAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.