miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29808 5' -54.9 NC_006273.1 + 196791 0.66 0.974428
Target:  5'- uGGCGGCAcagccgcaGGCGcucugccaguuGGCGAGGGAuACCGUc -3'
miRNA:   3'- -UUGCCGUa-------CUGC-----------UCGCUCUCU-UGGCA- -5'
29808 5' -54.9 NC_006273.1 + 117116 0.66 0.974428
Target:  5'- -uCGGCGUGACgGAGCGcGAG--UCGUa -3'
miRNA:   3'- uuGCCGUACUG-CUCGCuCUCuuGGCA- -5'
29808 5' -54.9 NC_006273.1 + 141452 0.66 0.974428
Target:  5'- cACGGUA-GACGA-CGuGAGAGCCa- -3'
miRNA:   3'- uUGCCGUaCUGCUcGCuCUCUUGGca -5'
29808 5' -54.9 NC_006273.1 + 72784 0.66 0.974428
Target:  5'- cGCGuGCAgccgcuCGGGCGGGuAGAGCCGc -3'
miRNA:   3'- uUGC-CGUacu---GCUCGCUC-UCUUGGCa -5'
29808 5' -54.9 NC_006273.1 + 53304 0.66 0.973384
Target:  5'- uGACGGCugacgggaauaaGACGGGUGAGGGAuuuCCa- -3'
miRNA:   3'- -UUGCCGua----------CUGCUCGCUCUCUu--GGca -5'
29808 5' -54.9 NC_006273.1 + 162421 0.66 0.97176
Target:  5'- -uCGGCAgGcCGAGCGGGAG-GCgGUg -3'
miRNA:   3'- uuGCCGUaCuGCUCGCUCUCuUGgCA- -5'
29808 5' -54.9 NC_006273.1 + 169619 0.66 0.97176
Target:  5'- uGACGGCAuggaUGAUGAGCugcuGGAGAcgAUCGg -3'
miRNA:   3'- -UUGCCGU----ACUGCUCGc---UCUCU--UGGCa -5'
29808 5' -54.9 NC_006273.1 + 53929 0.66 0.970639
Target:  5'- uGGCGGCAgcaguacacguCGAGCGucauGAGGACCa- -3'
miRNA:   3'- -UUGCCGUacu--------GCUCGCu---CUCUUGGca -5'
29808 5' -54.9 NC_006273.1 + 6744 0.66 0.968001
Target:  5'- aGGCGGaaacacaGACGAauacucggggggcuGCGAGGGAACCGc -3'
miRNA:   3'- -UUGCCgua----CUGCU--------------CGCUCUCUUGGCa -5'
29808 5' -54.9 NC_006273.1 + 123631 0.66 0.965835
Target:  5'- --gGGCGUG-CGGGaaaGAGAGAgaagGCCGg -3'
miRNA:   3'- uugCCGUACuGCUCg--CUCUCU----UGGCa -5'
29808 5' -54.9 NC_006273.1 + 37251 0.66 0.965835
Target:  5'- cGACGGCGgcgacGACGAG-GAGgaAGAcGCCGUg -3'
miRNA:   3'- -UUGCCGUa----CUGCUCgCUC--UCU-UGGCA- -5'
29808 5' -54.9 NC_006273.1 + 36942 0.66 0.965835
Target:  5'- -cCGGCAggUGGCGuGCGAGA---CCGUg -3'
miRNA:   3'- uuGCCGU--ACUGCuCGCUCUcuuGGCA- -5'
29808 5' -54.9 NC_006273.1 + 95196 0.66 0.965835
Target:  5'- aGACGGCGUGGCG-GCGucguuuuucGGAGCgCGUc -3'
miRNA:   3'- -UUGCCGUACUGCuCGCuc-------UCUUG-GCA- -5'
29808 5' -54.9 NC_006273.1 + 189324 0.66 0.962566
Target:  5'- uGCGGCGUcGGCGGGUGGGuG-GCCa- -3'
miRNA:   3'- uUGCCGUA-CUGCUCGCUCuCuUGGca -5'
29808 5' -54.9 NC_006273.1 + 193882 0.67 0.959086
Target:  5'- aGACGGUguucgauggagAUGGCGuGCGAGgaAGAaagcGCCGUg -3'
miRNA:   3'- -UUGCCG-----------UACUGCuCGCUC--UCU----UGGCA- -5'
29808 5' -54.9 NC_006273.1 + 210717 0.67 0.955768
Target:  5'- cGACGGCAgcGCGGGUGccgguuucgcugagcGAGAACCGg -3'
miRNA:   3'- -UUGCCGUacUGCUCGCu--------------CUCUUGGCa -5'
29808 5' -54.9 NC_006273.1 + 48561 0.67 0.955389
Target:  5'- --aGGCGUGugGcggGGUGAGGGGcggcauGCCGUu -3'
miRNA:   3'- uugCCGUACugC---UCGCUCUCU------UGGCA- -5'
29808 5' -54.9 NC_006273.1 + 112414 0.67 0.955389
Target:  5'- cGCGGCG-GACGAGgGAcugGAGGugCGc -3'
miRNA:   3'- uUGCCGUaCUGCUCgCU---CUCUugGCa -5'
29808 5' -54.9 NC_006273.1 + 132714 0.67 0.955389
Target:  5'- cGACGGUGauGCGAGUGGuGAGAgcGCCGg -3'
miRNA:   3'- -UUGCCGUacUGCUCGCU-CUCU--UGGCa -5'
29808 5' -54.9 NC_006273.1 + 229840 0.67 0.951472
Target:  5'- gAACGGCGagagGACGAucuucgcacGCGGGcuGAGCCGg -3'
miRNA:   3'- -UUGCCGUa---CUGCU---------CGCUCu-CUUGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.