miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29808 5' -54.9 NC_006273.1 + 139564 1.05 0.010281
Target:  5'- gAACGGCAUGACGAGCGAGAGAACCGUc -3'
miRNA:   3'- -UUGCCGUACUGCUCGCUCUCUUGGCA- -5'
29808 5' -54.9 NC_006273.1 + 118888 0.77 0.4878
Target:  5'- cGAgGGgAUGACGAGCGuGAGAGCCc- -3'
miRNA:   3'- -UUgCCgUACUGCUCGCuCUCUUGGca -5'
29808 5' -54.9 NC_006273.1 + 189856 0.76 0.549531
Target:  5'- uGCGGCAUGGCGGG-GGGAGAcgcgucgggcggaccGCCGg -3'
miRNA:   3'- uUGCCGUACUGCUCgCUCUCU---------------UGGCa -5'
29808 5' -54.9 NC_006273.1 + 136881 0.76 0.555454
Target:  5'- --aGGCAcGACGAGCGAGGGccCCGUc -3'
miRNA:   3'- uugCCGUaCUGCUCGCUCUCuuGGCA- -5'
29808 5' -54.9 NC_006273.1 + 29828 0.75 0.595353
Target:  5'- uGGCGGCAgccacgGAgGAGaCGAGAGAACCu- -3'
miRNA:   3'- -UUGCCGUa-----CUgCUC-GCUCUCUUGGca -5'
29808 5' -54.9 NC_006273.1 + 197112 0.72 0.744721
Target:  5'- cGACGGCgAUGGCGgguccggcGGCGucGGGGACCGUg -3'
miRNA:   3'- -UUGCCG-UACUGC--------UCGCu-CUCUUGGCA- -5'
29808 5' -54.9 NC_006273.1 + 2219 0.72 0.744721
Target:  5'- cGACGGCgAUGGCGgguccggcGGCGucGGGGACCGUg -3'
miRNA:   3'- -UUGCCG-UACUGC--------UCGCu-CUCUUGGCA- -5'
29808 5' -54.9 NC_006273.1 + 124246 0.72 0.763643
Target:  5'- -gUGGCAUGcuuggugucuGCGGgcGCGAGAGGGCCGg -3'
miRNA:   3'- uuGCCGUAC----------UGCU--CGCUCUCUUGGCa -5'
29808 5' -54.9 NC_006273.1 + 149919 0.71 0.800058
Target:  5'- cACGGCGUGugGGcCGAGcAGGGCCa- -3'
miRNA:   3'- uUGCCGUACugCUcGCUC-UCUUGGca -5'
29808 5' -54.9 NC_006273.1 + 14014 0.71 0.825849
Target:  5'- cGCGGgGUGGCgGAGCGGGgAGcGCCGa -3'
miRNA:   3'- uUGCCgUACUG-CUCGCUC-UCuUGGCa -5'
29808 5' -54.9 NC_006273.1 + 36375 0.7 0.850099
Target:  5'- uACGGgGUGGugcuCGAGCGAGAGcACUGg -3'
miRNA:   3'- uUGCCgUACU----GCUCGCUCUCuUGGCa -5'
29808 5' -54.9 NC_006273.1 + 38419 0.7 0.864575
Target:  5'- uGGCGGCAacagcGACGAGCGAggugggcGAGAaaACCGc -3'
miRNA:   3'- -UUGCCGUa----CUGCUCGCU-------CUCU--UGGCa -5'
29808 5' -54.9 NC_006273.1 + 37646 0.69 0.871901
Target:  5'- cGCGGCAaaaggcacgcuguUGACGGcGCGAGAGc-CCGUc -3'
miRNA:   3'- uUGCCGU-------------ACUGCU-CGCUCUCuuGGCA- -5'
29808 5' -54.9 NC_006273.1 + 85283 0.69 0.872622
Target:  5'- gGACGGCAaGGCgGAG-GAGAGAACgGa -3'
miRNA:   3'- -UUGCCGUaCUG-CUCgCUCUCUUGgCa -5'
29808 5' -54.9 NC_006273.1 + 145750 0.68 0.911905
Target:  5'- uGCGGCucaucgaccccGUGACGGGCGAGGauACCu- -3'
miRNA:   3'- uUGCCG-----------UACUGCUCGCUCUcuUGGca -5'
29808 5' -54.9 NC_006273.1 + 141044 0.68 0.911905
Target:  5'- gGGCGGUggGACGGGCccgcGGAcGGACCGg -3'
miRNA:   3'- -UUGCCGuaCUGCUCGc---UCU-CUUGGCa -5'
29808 5' -54.9 NC_006273.1 + 118621 0.68 0.911905
Target:  5'- -cCGGC-UGGaGAGCGAGAG-GCCGg -3'
miRNA:   3'- uuGCCGuACUgCUCGCUCUCuUGGCa -5'
29808 5' -54.9 NC_006273.1 + 10382 0.68 0.923186
Target:  5'- uGCGGCG-GACGcGUGAGAGAggAUCGa -3'
miRNA:   3'- uUGCCGUaCUGCuCGCUCUCU--UGGCa -5'
29808 5' -54.9 NC_006273.1 + 211192 0.68 0.923186
Target:  5'- -cCGGCGcGGCGGGUGGGGGAAaCGa -3'
miRNA:   3'- uuGCCGUaCUGCUCGCUCUCUUgGCa -5'
29808 5' -54.9 NC_006273.1 + 182662 0.68 0.923186
Target:  5'- uAACGGag-GACacaGAGCGGGAGGACaCGg -3'
miRNA:   3'- -UUGCCguaCUG---CUCGCUCUCUUG-GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.