Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29808 | 5' | -54.9 | NC_006273.1 | + | 169619 | 0.66 | 0.97176 |
Target: 5'- uGACGGCAuggaUGAUGAGCugcuGGAGAcgAUCGg -3' miRNA: 3'- -UUGCCGU----ACUGCUCGc---UCUCU--UGGCa -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 53304 | 0.66 | 0.973384 |
Target: 5'- uGACGGCugacgggaauaaGACGGGUGAGGGAuuuCCa- -3' miRNA: 3'- -UUGCCGua----------CUGCUCGCUCUCUu--GGca -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 72784 | 0.66 | 0.974428 |
Target: 5'- cGCGuGCAgccgcuCGGGCGGGuAGAGCCGc -3' miRNA: 3'- uUGC-CGUacu---GCUCGCUC-UCUUGGCa -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 117116 | 0.66 | 0.974428 |
Target: 5'- -uCGGCGUGACgGAGCGcGAG--UCGUa -3' miRNA: 3'- uuGCCGUACUG-CUCGCuCUCuuGGCA- -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 141452 | 0.66 | 0.974428 |
Target: 5'- cACGGUA-GACGA-CGuGAGAGCCa- -3' miRNA: 3'- uUGCCGUaCUGCUcGCuCUCUUGGca -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 196791 | 0.66 | 0.974428 |
Target: 5'- uGGCGGCAcagccgcaGGCGcucugccaguuGGCGAGGGAuACCGUc -3' miRNA: 3'- -UUGCCGUa-------CUGC-----------UCGCUCUCU-UGGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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