miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29808 5' -54.9 NC_006273.1 + 2219 0.72 0.744721
Target:  5'- cGACGGCgAUGGCGgguccggcGGCGucGGGGACCGUg -3'
miRNA:   3'- -UUGCCG-UACUGC--------UCGCu-CUCUUGGCA- -5'
29808 5' -54.9 NC_006273.1 + 6744 0.66 0.968001
Target:  5'- aGGCGGaaacacaGACGAauacucggggggcuGCGAGGGAACCGc -3'
miRNA:   3'- -UUGCCgua----CUGCU--------------CGCUCUCUUGGCa -5'
29808 5' -54.9 NC_006273.1 + 10382 0.68 0.923186
Target:  5'- uGCGGCG-GACGcGUGAGAGAggAUCGa -3'
miRNA:   3'- uUGCCGUaCUGCuCGCUCUCU--UGGCa -5'
29808 5' -54.9 NC_006273.1 + 14014 0.71 0.825849
Target:  5'- cGCGGgGUGGCgGAGCGGGgAGcGCCGa -3'
miRNA:   3'- uUGCCgUACUG-CUCGCUC-UCuUGGCa -5'
29808 5' -54.9 NC_006273.1 + 29828 0.75 0.595353
Target:  5'- uGGCGGCAgccacgGAgGAGaCGAGAGAACCu- -3'
miRNA:   3'- -UUGCCGUa-----CUgCUC-GCUCUCUUGGca -5'
29808 5' -54.9 NC_006273.1 + 36375 0.7 0.850099
Target:  5'- uACGGgGUGGugcuCGAGCGAGAGcACUGg -3'
miRNA:   3'- uUGCCgUACU----GCUCGCUCUCuUGGCa -5'
29808 5' -54.9 NC_006273.1 + 36942 0.66 0.965835
Target:  5'- -cCGGCAggUGGCGuGCGAGA---CCGUg -3'
miRNA:   3'- uuGCCGU--ACUGCuCGCUCUcuuGGCA- -5'
29808 5' -54.9 NC_006273.1 + 37251 0.66 0.965835
Target:  5'- cGACGGCGgcgacGACGAG-GAGgaAGAcGCCGUg -3'
miRNA:   3'- -UUGCCGUa----CUGCUCgCUC--UCU-UGGCA- -5'
29808 5' -54.9 NC_006273.1 + 37646 0.69 0.871901
Target:  5'- cGCGGCAaaaggcacgcuguUGACGGcGCGAGAGc-CCGUc -3'
miRNA:   3'- uUGCCGU-------------ACUGCU-CGCUCUCuuGGCA- -5'
29808 5' -54.9 NC_006273.1 + 38419 0.7 0.864575
Target:  5'- uGGCGGCAacagcGACGAGCGAggugggcGAGAaaACCGc -3'
miRNA:   3'- -UUGCCGUa----CUGCUCGCU-------CUCU--UGGCa -5'
29808 5' -54.9 NC_006273.1 + 48561 0.67 0.955389
Target:  5'- --aGGCGUGugGcggGGUGAGGGGcggcauGCCGUu -3'
miRNA:   3'- uugCCGUACugC---UCGCUCUCU------UGGCA- -5'
29808 5' -54.9 NC_006273.1 + 53304 0.66 0.973384
Target:  5'- uGACGGCugacgggaauaaGACGGGUGAGGGAuuuCCa- -3'
miRNA:   3'- -UUGCCGua----------CUGCUCGCUCUCUu--GGca -5'
29808 5' -54.9 NC_006273.1 + 53929 0.66 0.970639
Target:  5'- uGGCGGCAgcaguacacguCGAGCGucauGAGGACCa- -3'
miRNA:   3'- -UUGCCGUacu--------GCUCGCu---CUCUUGGca -5'
29808 5' -54.9 NC_006273.1 + 68011 0.67 0.951472
Target:  5'- cGGCGGCGUcAUGGGUGgcGGAGGACUGc -3'
miRNA:   3'- -UUGCCGUAcUGCUCGC--UCUCUUGGCa -5'
29808 5' -54.9 NC_006273.1 + 72784 0.66 0.974428
Target:  5'- cGCGuGCAgccgcuCGGGCGGGuAGAGCCGc -3'
miRNA:   3'- uUGC-CGUacu---GCUCGCUC-UCUUGGCa -5'
29808 5' -54.9 NC_006273.1 + 85283 0.69 0.872622
Target:  5'- gGACGGCAaGGCgGAG-GAGAGAACgGa -3'
miRNA:   3'- -UUGCCGUaCUG-CUCgCUCUCUUGgCa -5'
29808 5' -54.9 NC_006273.1 + 95196 0.66 0.965835
Target:  5'- aGACGGCGUGGCG-GCGucguuuuucGGAGCgCGUc -3'
miRNA:   3'- -UUGCCGUACUGCuCGCuc-------UCUUG-GCA- -5'
29808 5' -54.9 NC_006273.1 + 99833 0.67 0.938366
Target:  5'- cGACGGU--GGCuGGGCGGGAGGAgCGg -3'
miRNA:   3'- -UUGCCGuaCUG-CUCGCUCUCUUgGCa -5'
29808 5' -54.9 NC_006273.1 + 101072 0.67 0.951472
Target:  5'- -uUGGCugagGAgGGGUGAGAaGAACCGa -3'
miRNA:   3'- uuGCCGua--CUgCUCGCUCU-CUUGGCa -5'
29808 5' -54.9 NC_006273.1 + 112414 0.67 0.955389
Target:  5'- cGCGGCG-GACGAGgGAcugGAGGugCGc -3'
miRNA:   3'- uUGCCGUaCUGCUCgCU---CUCUugGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.