Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 29808 | 5' | -54.9 | NC_006273.1 | + | 193882 | 0.67 | 0.959086 |
|
Target: 5'- aGACGGUguucgauggagAUGGCGuGCGAGgaAGAaagcGCCGUg -3' miRNA: 3'- -UUGCCG-----------UACUGCuCGCUC--UCU----UGGCA- -5' |
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| 29808 | 5' | -54.9 | NC_006273.1 | + | 196791 | 0.66 | 0.974428 |
|
Target: 5'- uGGCGGCAcagccgcaGGCGcucugccaguuGGCGAGGGAuACCGUc -3' miRNA: 3'- -UUGCCGUa-------CUGC-----------UCGCUCUCU-UGGCA- -5' |
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| 29808 | 5' | -54.9 | NC_006273.1 | + | 197112 | 0.72 | 0.744721 |
|
Target: 5'- cGACGGCgAUGGCGgguccggcGGCGucGGGGACCGUg -3' miRNA: 3'- -UUGCCG-UACUGC--------UCGCu-CUCUUGGCA- -5' |
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| 29808 | 5' | -54.9 | NC_006273.1 | + | 210717 | 0.67 | 0.955768 |
|
Target: 5'- cGACGGCAgcGCGGGUGccgguuucgcugagcGAGAACCGg -3' miRNA: 3'- -UUGCCGUacUGCUCGCu--------------CUCUUGGCa -5' |
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| 29808 | 5' | -54.9 | NC_006273.1 | + | 211192 | 0.68 | 0.923186 |
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Target: 5'- -cCGGCGcGGCGGGUGGGGGAAaCGa -3' miRNA: 3'- uuGCCGUaCUGCUCGCUCUCUUgGCa -5' |
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| 29808 | 5' | -54.9 | NC_006273.1 | + | 229840 | 0.67 | 0.951472 |
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Target: 5'- gAACGGCGagagGACGAucuucgcacGCGGGcuGAGCCGg -3' miRNA: 3'- -UUGCCGUa---CUGCU---------CGCUCu-CUUGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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