miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29808 5' -54.9 NC_006273.1 + 229840 0.67 0.951472
Target:  5'- gAACGGCGagagGACGAucuucgcacGCGGGcuGAGCCGg -3'
miRNA:   3'- -UUGCCGUa---CUGCU---------CGCUCu-CUUGGCa -5'
29808 5' -54.9 NC_006273.1 + 211192 0.68 0.923186
Target:  5'- -cCGGCGcGGCGGGUGGGGGAAaCGa -3'
miRNA:   3'- uuGCCGUaCUGCUCGCUCUCUUgGCa -5'
29808 5' -54.9 NC_006273.1 + 210717 0.67 0.955768
Target:  5'- cGACGGCAgcGCGGGUGccgguuucgcugagcGAGAACCGg -3'
miRNA:   3'- -UUGCCGUacUGCUCGCu--------------CUCUUGGCa -5'
29808 5' -54.9 NC_006273.1 + 197112 0.72 0.744721
Target:  5'- cGACGGCgAUGGCGgguccggcGGCGucGGGGACCGUg -3'
miRNA:   3'- -UUGCCG-UACUGC--------UCGCu-CUCUUGGCA- -5'
29808 5' -54.9 NC_006273.1 + 196791 0.66 0.974428
Target:  5'- uGGCGGCAcagccgcaGGCGcucugccaguuGGCGAGGGAuACCGUc -3'
miRNA:   3'- -UUGCCGUa-------CUGC-----------UCGCUCUCU-UGGCA- -5'
29808 5' -54.9 NC_006273.1 + 193882 0.67 0.959086
Target:  5'- aGACGGUguucgauggagAUGGCGuGCGAGgaAGAaagcGCCGUg -3'
miRNA:   3'- -UUGCCG-----------UACUGCuCGCUC--UCU----UGGCA- -5'
29808 5' -54.9 NC_006273.1 + 189856 0.76 0.549531
Target:  5'- uGCGGCAUGGCGGG-GGGAGAcgcgucgggcggaccGCCGg -3'
miRNA:   3'- uUGCCGUACUGCUCgCUCUCU---------------UGGCa -5'
29808 5' -54.9 NC_006273.1 + 189324 0.66 0.962566
Target:  5'- uGCGGCGUcGGCGGGUGGGuG-GCCa- -3'
miRNA:   3'- uUGCCGUA-CUGCUCGCUCuCuUGGca -5'
29808 5' -54.9 NC_006273.1 + 182662 0.68 0.923186
Target:  5'- uAACGGag-GACacaGAGCGGGAGGACaCGg -3'
miRNA:   3'- -UUGCCguaCUG---CUCGCUCUCUUG-GCa -5'
29808 5' -54.9 NC_006273.1 + 169619 0.66 0.97176
Target:  5'- uGACGGCAuggaUGAUGAGCugcuGGAGAcgAUCGg -3'
miRNA:   3'- -UUGCCGU----ACUGCUCGc---UCUCU--UGGCa -5'
29808 5' -54.9 NC_006273.1 + 162421 0.66 0.97176
Target:  5'- -uCGGCAgGcCGAGCGGGAG-GCgGUg -3'
miRNA:   3'- uuGCCGUaCuGCUCGCUCUCuUGgCA- -5'
29808 5' -54.9 NC_006273.1 + 157405 0.68 0.923186
Target:  5'- aGGCGGCGUGGacUGAGaCGAGgaggaGGGGCCGc -3'
miRNA:   3'- -UUGCCGUACU--GCUC-GCUC-----UCUUGGCa -5'
29808 5' -54.9 NC_006273.1 + 153594 0.67 0.942963
Target:  5'- cGGCGGCGUGACcGGCGGugcggucgcGGGuGGCCGg -3'
miRNA:   3'- -UUGCCGUACUGcUCGCU---------CUC-UUGGCa -5'
29808 5' -54.9 NC_006273.1 + 149919 0.71 0.800058
Target:  5'- cACGGCGUGugGGcCGAGcAGGGCCa- -3'
miRNA:   3'- uUGCCGUACugCUcGCUC-UCUUGGca -5'
29808 5' -54.9 NC_006273.1 + 145750 0.68 0.911905
Target:  5'- uGCGGCucaucgaccccGUGACGGGCGAGGauACCu- -3'
miRNA:   3'- uUGCCG-----------UACUGCUCGCUCUcuUGGca -5'
29808 5' -54.9 NC_006273.1 + 141452 0.66 0.974428
Target:  5'- cACGGUA-GACGA-CGuGAGAGCCa- -3'
miRNA:   3'- uUGCCGUaCUGCUcGCuCUCUUGGca -5'
29808 5' -54.9 NC_006273.1 + 141044 0.68 0.911905
Target:  5'- gGGCGGUggGACGGGCccgcGGAcGGACCGg -3'
miRNA:   3'- -UUGCCGuaCUGCUCGc---UCU-CUUGGCa -5'
29808 5' -54.9 NC_006273.1 + 139564 1.05 0.010281
Target:  5'- gAACGGCAUGACGAGCGAGAGAACCGUc -3'
miRNA:   3'- -UUGCCGUACUGCUCGCUCUCUUGGCA- -5'
29808 5' -54.9 NC_006273.1 + 136881 0.76 0.555454
Target:  5'- --aGGCAcGACGAGCGAGGGccCCGUc -3'
miRNA:   3'- uugCCGUaCUGCUCGCUCUCuuGGCA- -5'
29808 5' -54.9 NC_006273.1 + 132714 0.67 0.955389
Target:  5'- cGACGGUGauGCGAGUGGuGAGAgcGCCGg -3'
miRNA:   3'- -UUGCCGUacUGCUCGCU-CUCU--UGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.