Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29808 | 5' | -54.9 | NC_006273.1 | + | 124246 | 0.72 | 0.763643 |
Target: 5'- -gUGGCAUGcuuggugucuGCGGgcGCGAGAGGGCCGg -3' miRNA: 3'- uuGCCGUAC----------UGCU--CGCUCUCUUGGCa -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 123631 | 0.66 | 0.965835 |
Target: 5'- --gGGCGUG-CGGGaaaGAGAGAgaagGCCGg -3' miRNA: 3'- uugCCGUACuGCUCg--CUCUCU----UGGCa -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 118888 | 0.77 | 0.4878 |
Target: 5'- cGAgGGgAUGACGAGCGuGAGAGCCc- -3' miRNA: 3'- -UUgCCgUACUGCUCGCuCUCUUGGca -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 118621 | 0.68 | 0.911905 |
Target: 5'- -cCGGC-UGGaGAGCGAGAG-GCCGg -3' miRNA: 3'- uuGCCGuACUgCUCGCUCUCuUGGCa -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 117116 | 0.66 | 0.974428 |
Target: 5'- -uCGGCGUGACgGAGCGcGAG--UCGUa -3' miRNA: 3'- uuGCCGUACUG-CUCGCuCUCuuGGCA- -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 115393 | 0.67 | 0.947331 |
Target: 5'- uGACGGCAUuAUGAGCGGcGGcGCUGUa -3' miRNA: 3'- -UUGCCGUAcUGCUCGCUcUCuUGGCA- -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 112414 | 0.67 | 0.955389 |
Target: 5'- cGCGGCG-GACGAGgGAcugGAGGugCGc -3' miRNA: 3'- uUGCCGUaCUGCUCgCU---CUCUugGCa -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 101072 | 0.67 | 0.951472 |
Target: 5'- -uUGGCugagGAgGGGUGAGAaGAACCGa -3' miRNA: 3'- uuGCCGua--CUgCUCGCUCU-CUUGGCa -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 99833 | 0.67 | 0.938366 |
Target: 5'- cGACGGU--GGCuGGGCGGGAGGAgCGg -3' miRNA: 3'- -UUGCCGuaCUG-CUCGCUCUCUUgGCa -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 95196 | 0.66 | 0.965835 |
Target: 5'- aGACGGCGUGGCG-GCGucguuuuucGGAGCgCGUc -3' miRNA: 3'- -UUGCCGUACUGCuCGCuc-------UCUUG-GCA- -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 85283 | 0.69 | 0.872622 |
Target: 5'- gGACGGCAaGGCgGAG-GAGAGAACgGa -3' miRNA: 3'- -UUGCCGUaCUG-CUCgCUCUCUUGgCa -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 72784 | 0.66 | 0.974428 |
Target: 5'- cGCGuGCAgccgcuCGGGCGGGuAGAGCCGc -3' miRNA: 3'- uUGC-CGUacu---GCUCGCUC-UCUUGGCa -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 68011 | 0.67 | 0.951472 |
Target: 5'- cGGCGGCGUcAUGGGUGgcGGAGGACUGc -3' miRNA: 3'- -UUGCCGUAcUGCUCGC--UCUCUUGGCa -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 53929 | 0.66 | 0.970639 |
Target: 5'- uGGCGGCAgcaguacacguCGAGCGucauGAGGACCa- -3' miRNA: 3'- -UUGCCGUacu--------GCUCGCu---CUCUUGGca -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 53304 | 0.66 | 0.973384 |
Target: 5'- uGACGGCugacgggaauaaGACGGGUGAGGGAuuuCCa- -3' miRNA: 3'- -UUGCCGua----------CUGCUCGCUCUCUu--GGca -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 48561 | 0.67 | 0.955389 |
Target: 5'- --aGGCGUGugGcggGGUGAGGGGcggcauGCCGUu -3' miRNA: 3'- uugCCGUACugC---UCGCUCUCU------UGGCA- -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 38419 | 0.7 | 0.864575 |
Target: 5'- uGGCGGCAacagcGACGAGCGAggugggcGAGAaaACCGc -3' miRNA: 3'- -UUGCCGUa----CUGCUCGCU-------CUCU--UGGCa -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 37646 | 0.69 | 0.871901 |
Target: 5'- cGCGGCAaaaggcacgcuguUGACGGcGCGAGAGc-CCGUc -3' miRNA: 3'- uUGCCGU-------------ACUGCU-CGCUCUCuuGGCA- -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 37251 | 0.66 | 0.965835 |
Target: 5'- cGACGGCGgcgacGACGAG-GAGgaAGAcGCCGUg -3' miRNA: 3'- -UUGCCGUa----CUGCUCgCUC--UCU-UGGCA- -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 36942 | 0.66 | 0.965835 |
Target: 5'- -cCGGCAggUGGCGuGCGAGA---CCGUg -3' miRNA: 3'- uuGCCGU--ACUGCuCGCUCUcuuGGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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