miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29808 5' -54.9 NC_006273.1 + 53929 0.66 0.970639
Target:  5'- uGGCGGCAgcaguacacguCGAGCGucauGAGGACCa- -3'
miRNA:   3'- -UUGCCGUacu--------GCUCGCu---CUCUUGGca -5'
29808 5' -54.9 NC_006273.1 + 48561 0.67 0.955389
Target:  5'- --aGGCGUGugGcggGGUGAGGGGcggcauGCCGUu -3'
miRNA:   3'- uugCCGUACugC---UCGCUCUCU------UGGCA- -5'
29808 5' -54.9 NC_006273.1 + 132714 0.67 0.955389
Target:  5'- cGACGGUGauGCGAGUGGuGAGAgcGCCGg -3'
miRNA:   3'- -UUGCCGUacUGCUCGCU-CUCU--UGGCa -5'
29808 5' -54.9 NC_006273.1 + 210717 0.67 0.955768
Target:  5'- cGACGGCAgcGCGGGUGccgguuucgcugagcGAGAACCGg -3'
miRNA:   3'- -UUGCCGUacUGCUCGCu--------------CUCUUGGCa -5'
29808 5' -54.9 NC_006273.1 + 193882 0.67 0.959086
Target:  5'- aGACGGUguucgauggagAUGGCGuGCGAGgaAGAaagcGCCGUg -3'
miRNA:   3'- -UUGCCG-----------UACUGCuCGCUC--UCU----UGGCA- -5'
29808 5' -54.9 NC_006273.1 + 189324 0.66 0.962566
Target:  5'- uGCGGCGUcGGCGGGUGGGuG-GCCa- -3'
miRNA:   3'- uUGCCGUA-CUGCUCGCUCuCuUGGca -5'
29808 5' -54.9 NC_006273.1 + 36942 0.66 0.965835
Target:  5'- -cCGGCAggUGGCGuGCGAGA---CCGUg -3'
miRNA:   3'- uuGCCGU--ACUGCuCGCUCUcuuGGCA- -5'
29808 5' -54.9 NC_006273.1 + 37251 0.66 0.965835
Target:  5'- cGACGGCGgcgacGACGAG-GAGgaAGAcGCCGUg -3'
miRNA:   3'- -UUGCCGUa----CUGCUCgCUC--UCU-UGGCA- -5'
29808 5' -54.9 NC_006273.1 + 123631 0.66 0.965835
Target:  5'- --gGGCGUG-CGGGaaaGAGAGAgaagGCCGg -3'
miRNA:   3'- uugCCGUACuGCUCg--CUCUCU----UGGCa -5'
29808 5' -54.9 NC_006273.1 + 229840 0.67 0.951472
Target:  5'- gAACGGCGagagGACGAucuucgcacGCGGGcuGAGCCGg -3'
miRNA:   3'- -UUGCCGUa---CUGCU---------CGCUCu-CUUGGCa -5'
29808 5' -54.9 NC_006273.1 + 101072 0.67 0.951472
Target:  5'- -uUGGCugagGAgGGGUGAGAaGAACCGa -3'
miRNA:   3'- uuGCCGua--CUgCUCGCUCU-CUUGGCa -5'
29808 5' -54.9 NC_006273.1 + 115393 0.67 0.947331
Target:  5'- uGACGGCAUuAUGAGCGGcGGcGCUGUa -3'
miRNA:   3'- -UUGCCGUAcUGCUCGCUcUCuUGGCA- -5'
29808 5' -54.9 NC_006273.1 + 189856 0.76 0.549531
Target:  5'- uGCGGCAUGGCGGG-GGGAGAcgcgucgggcggaccGCCGg -3'
miRNA:   3'- uUGCCGUACUGCUCgCUCUCU---------------UGGCa -5'
29808 5' -54.9 NC_006273.1 + 197112 0.72 0.744721
Target:  5'- cGACGGCgAUGGCGgguccggcGGCGucGGGGACCGUg -3'
miRNA:   3'- -UUGCCG-UACUGC--------UCGCu-CUCUUGGCA- -5'
29808 5' -54.9 NC_006273.1 + 124246 0.72 0.763643
Target:  5'- -gUGGCAUGcuuggugucuGCGGgcGCGAGAGGGCCGg -3'
miRNA:   3'- uuGCCGUAC----------UGCU--CGCUCUCUUGGCa -5'
29808 5' -54.9 NC_006273.1 + 149919 0.71 0.800058
Target:  5'- cACGGCGUGugGGcCGAGcAGGGCCa- -3'
miRNA:   3'- uUGCCGUACugCUcGCUC-UCUUGGca -5'
29808 5' -54.9 NC_006273.1 + 38419 0.7 0.864575
Target:  5'- uGGCGGCAacagcGACGAGCGAggugggcGAGAaaACCGc -3'
miRNA:   3'- -UUGCCGUa----CUGCUCGCU-------CUCU--UGGCa -5'
29808 5' -54.9 NC_006273.1 + 37646 0.69 0.871901
Target:  5'- cGCGGCAaaaggcacgcuguUGACGGcGCGAGAGc-CCGUc -3'
miRNA:   3'- uUGCCGU-------------ACUGCU-CGCUCUCuuGGCA- -5'
29808 5' -54.9 NC_006273.1 + 211192 0.68 0.923186
Target:  5'- -cCGGCGcGGCGGGUGGGGGAAaCGa -3'
miRNA:   3'- uuGCCGUaCUGCUCGCUCUCUUgGCa -5'
29808 5' -54.9 NC_006273.1 + 99833 0.67 0.938366
Target:  5'- cGACGGU--GGCuGGGCGGGAGGAgCGg -3'
miRNA:   3'- -UUGCCGuaCUG-CUCGCUCUCUUgGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.