Results 41 - 46 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 29808 | 5' | -54.9 | NC_006273.1 | + | 14014 | 0.71 | 0.825849 |
|
Target: 5'- cGCGGgGUGGCgGAGCGGGgAGcGCCGa -3' miRNA: 3'- uUGCCgUACUG-CUCGCUC-UCuUGGCa -5' |
|||||||
| 29808 | 5' | -54.9 | NC_006273.1 | + | 36375 | 0.7 | 0.850099 |
|
Target: 5'- uACGGgGUGGugcuCGAGCGAGAGcACUGg -3' miRNA: 3'- uUGCCgUACU----GCUCGCUCUCuUGGCa -5' |
|||||||
| 29808 | 5' | -54.9 | NC_006273.1 | + | 85283 | 0.69 | 0.872622 |
|
Target: 5'- gGACGGCAaGGCgGAG-GAGAGAACgGa -3' miRNA: 3'- -UUGCCGUaCUG-CUCgCUCUCUUGgCa -5' |
|||||||
| 29808 | 5' | -54.9 | NC_006273.1 | + | 141044 | 0.68 | 0.911905 |
|
Target: 5'- gGGCGGUggGACGGGCccgcGGAcGGACCGg -3' miRNA: 3'- -UUGCCGuaCUGCUCGc---UCU-CUUGGCa -5' |
|||||||
| 29808 | 5' | -54.9 | NC_006273.1 | + | 145750 | 0.68 | 0.911905 |
|
Target: 5'- uGCGGCucaucgaccccGUGACGGGCGAGGauACCu- -3' miRNA: 3'- uUGCCG-----------UACUGCUCGCUCUcuUGGca -5' |
|||||||
| 29808 | 5' | -54.9 | NC_006273.1 | + | 196791 | 0.66 | 0.974428 |
|
Target: 5'- uGGCGGCAcagccgcaGGCGcucugccaguuGGCGAGGGAuACCGUc -3' miRNA: 3'- -UUGCCGUa-------CUGC-----------UCGCUCUCU-UGGCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home