Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29808 | 5' | -54.9 | NC_006273.1 | + | 139564 | 1.05 | 0.010281 |
Target: 5'- gAACGGCAUGACGAGCGAGAGAACCGUc -3' miRNA: 3'- -UUGCCGUACUGCUCGCUCUCUUGGCA- -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 6744 | 0.66 | 0.968001 |
Target: 5'- aGGCGGaaacacaGACGAauacucggggggcuGCGAGGGAACCGc -3' miRNA: 3'- -UUGCCgua----CUGCU--------------CGCUCUCUUGGCa -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 169619 | 0.66 | 0.97176 |
Target: 5'- uGACGGCAuggaUGAUGAGCugcuGGAGAcgAUCGg -3' miRNA: 3'- -UUGCCGU----ACUGCUCGc---UCUCU--UGGCa -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 196791 | 0.66 | 0.974428 |
Target: 5'- uGGCGGCAcagccgcaGGCGcucugccaguuGGCGAGGGAuACCGUc -3' miRNA: 3'- -UUGCCGUa-------CUGC-----------UCGCUCUCU-UGGCA- -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 14014 | 0.71 | 0.825849 |
Target: 5'- cGCGGgGUGGCgGAGCGGGgAGcGCCGa -3' miRNA: 3'- uUGCCgUACUG-CUCGCUC-UCuUGGCa -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 36375 | 0.7 | 0.850099 |
Target: 5'- uACGGgGUGGugcuCGAGCGAGAGcACUGg -3' miRNA: 3'- uUGCCgUACU----GCUCGCUCUCuUGGCa -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 141044 | 0.68 | 0.911905 |
Target: 5'- gGGCGGUggGACGGGCccgcGGAcGGACCGg -3' miRNA: 3'- -UUGCCGuaCUGCUCGc---UCU-CUUGGCa -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 145750 | 0.68 | 0.911905 |
Target: 5'- uGCGGCucaucgaccccGUGACGGGCGAGGauACCu- -3' miRNA: 3'- uUGCCG-----------UACUGCUCGCUCUcuUGGca -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 10382 | 0.68 | 0.923186 |
Target: 5'- uGCGGCG-GACGcGUGAGAGAggAUCGa -3' miRNA: 3'- uUGCCGUaCUGCuCGCUCUCU--UGGCa -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 95196 | 0.66 | 0.965835 |
Target: 5'- aGACGGCGUGGCG-GCGucguuuuucGGAGCgCGUc -3' miRNA: 3'- -UUGCCGUACUGCuCGCuc-------UCUUG-GCA- -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 153594 | 0.67 | 0.942963 |
Target: 5'- cGGCGGCGUGACcGGCGGugcggucgcGGGuGGCCGg -3' miRNA: 3'- -UUGCCGUACUGcUCGCU---------CUC-UUGGCa -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 182662 | 0.68 | 0.923186 |
Target: 5'- uAACGGag-GACacaGAGCGGGAGGACaCGg -3' miRNA: 3'- -UUGCCguaCUG---CUCGCUCUCUUG-GCa -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 136881 | 0.76 | 0.555454 |
Target: 5'- --aGGCAcGACGAGCGAGGGccCCGUc -3' miRNA: 3'- uugCCGUaCUGCUCGCUCUCuuGGCA- -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 68011 | 0.67 | 0.951472 |
Target: 5'- cGGCGGCGUcAUGGGUGgcGGAGGACUGc -3' miRNA: 3'- -UUGCCGUAcUGCUCGC--UCUCUUGGCa -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 29828 | 0.75 | 0.595353 |
Target: 5'- uGGCGGCAgccacgGAgGAGaCGAGAGAACCu- -3' miRNA: 3'- -UUGCCGUa-----CUgCUC-GCUCUCUUGGca -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 118621 | 0.68 | 0.911905 |
Target: 5'- -cCGGC-UGGaGAGCGAGAG-GCCGg -3' miRNA: 3'- uuGCCGuACUgCUCGCUCUCuUGGCa -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 112414 | 0.67 | 0.955389 |
Target: 5'- cGCGGCG-GACGAGgGAcugGAGGugCGc -3' miRNA: 3'- uUGCCGUaCUGCUCgCU---CUCUugGCa -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 162421 | 0.66 | 0.97176 |
Target: 5'- -uCGGCAgGcCGAGCGGGAG-GCgGUg -3' miRNA: 3'- uuGCCGUaCuGCUCGCUCUCuUGgCA- -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 2219 | 0.72 | 0.744721 |
Target: 5'- cGACGGCgAUGGCGgguccggcGGCGucGGGGACCGUg -3' miRNA: 3'- -UUGCCG-UACUGC--------UCGCu-CUCUUGGCA- -5' |
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29808 | 5' | -54.9 | NC_006273.1 | + | 85283 | 0.69 | 0.872622 |
Target: 5'- gGACGGCAaGGCgGAG-GAGAGAACgGa -3' miRNA: 3'- -UUGCCGUaCUG-CUCgCUCUCUUGgCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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