miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29809 3' -55.9 NC_006273.1 + 189881 0.66 0.960722
Target:  5'- ----cGGGcggaccGCCGGGCaucgccGUCGGCUGCGa -3'
miRNA:   3'- uuauaUCCa-----CGGCCUG------CGGCCGAUGC- -5'
29809 3' -55.9 NC_006273.1 + 132120 0.66 0.960722
Target:  5'- uAGUcgAGGUGCUGGGCGU--GUUGCa -3'
miRNA:   3'- -UUAuaUCCACGGCCUGCGgcCGAUGc -5'
29809 3' -55.9 NC_006273.1 + 206127 0.66 0.960722
Target:  5'- ----gGGGUGUCGG-CGUgGGC-ACGg -3'
miRNA:   3'- uuauaUCCACGGCCuGCGgCCGaUGC- -5'
29809 3' -55.9 NC_006273.1 + 34669 0.66 0.95715
Target:  5'- --cAUGGcGUGCUugggauguuuGGGCGCCGGCg--- -3'
miRNA:   3'- uuaUAUC-CACGG----------CCUGCGGCCGaugc -5'
29809 3' -55.9 NC_006273.1 + 22239 0.66 0.95715
Target:  5'- gAGUGUcAGaUGaCGGGCGCCGGCgaGCGa -3'
miRNA:   3'- -UUAUA-UCcACgGCCUGCGGCCGa-UGC- -5'
29809 3' -55.9 NC_006273.1 + 87971 0.66 0.95715
Target:  5'- --------cGCCGGACGCCGcGCcgACGc -3'
miRNA:   3'- uuauauccaCGGCCUGCGGC-CGa-UGC- -5'
29809 3' -55.9 NC_006273.1 + 204702 0.66 0.95678
Target:  5'- ---uUGGGUgucGCCGGcgagccccgaggcGCGCCcGCUGCGa -3'
miRNA:   3'- uuauAUCCA---CGGCC-------------UGCGGcCGAUGC- -5'
29809 3' -55.9 NC_006273.1 + 88584 0.66 0.949354
Target:  5'- --aGUGGcG-GCCauGGGCGCCGGC-ACGc -3'
miRNA:   3'- uuaUAUC-CaCGG--CCUGCGGCCGaUGC- -5'
29809 3' -55.9 NC_006273.1 + 148654 0.66 0.949354
Target:  5'- -----uGGcGCCGGAgGCCGGCcuggaggucUGCGc -3'
miRNA:   3'- uuauauCCaCGGCCUgCGGCCG---------AUGC- -5'
29809 3' -55.9 NC_006273.1 + 145555 0.66 0.949354
Target:  5'- ----gGGGUuCCGGGCGgCGGUgcugGCGg -3'
miRNA:   3'- uuauaUCCAcGGCCUGCgGCCGa---UGC- -5'
29809 3' -55.9 NC_006273.1 + 70925 0.66 0.945124
Target:  5'- ----cGGGuUGCCuGGACGCCugGGCgcgACGc -3'
miRNA:   3'- uuauaUCC-ACGG-CCUGCGG--CCGa--UGC- -5'
29809 3' -55.9 NC_006273.1 + 178815 0.66 0.940669
Target:  5'- ----aAGGUGgaUCGGGCGgCGGCgGCGg -3'
miRNA:   3'- uuauaUCCAC--GGCCUGCgGCCGaUGC- -5'
29809 3' -55.9 NC_006273.1 + 144810 0.66 0.940669
Target:  5'- -----cGGUGCCGGGCGUgGaGUUucGCGg -3'
miRNA:   3'- uuauauCCACGGCCUGCGgC-CGA--UGC- -5'
29809 3' -55.9 NC_006273.1 + 152609 0.66 0.940669
Target:  5'- ----cGGGUGUgucuCGGugGCCcGCUGCa -3'
miRNA:   3'- uuauaUCCACG----GCCugCGGcCGAUGc -5'
29809 3' -55.9 NC_006273.1 + 49973 0.67 0.935986
Target:  5'- -----cGGUGCUGGuccaccACGUCGGCcGCGa -3'
miRNA:   3'- uuauauCCACGGCC------UGCGGCCGaUGC- -5'
29809 3' -55.9 NC_006273.1 + 133478 0.67 0.925935
Target:  5'- ----cGGcGUGCaggcgCGGACGCUGGCgGCGg -3'
miRNA:   3'- uuauaUC-CACG-----GCCUGCGGCCGaUGC- -5'
29809 3' -55.9 NC_006273.1 + 164669 0.67 0.920565
Target:  5'- cGUGUAcGUGCuCGGGUGCCGGgUACa -3'
miRNA:   3'- uUAUAUcCACG-GCCUGCGGCCgAUGc -5'
29809 3' -55.9 NC_006273.1 + 149723 0.67 0.920565
Target:  5'- --cGUGGGUcauguccuggGCCGGcUGCCGGCgcuguUACGg -3'
miRNA:   3'- uuaUAUCCA----------CGGCCuGCGGCCG-----AUGC- -5'
29809 3' -55.9 NC_006273.1 + 106219 0.67 0.920565
Target:  5'- cGUAcAGGUGCCGcggguggccagcGGCGCCGGUUuGCc -3'
miRNA:   3'- uUAUaUCCACGGC------------CUGCGGCCGA-UGc -5'
29809 3' -55.9 NC_006273.1 + 123931 0.67 0.920565
Target:  5'- --gGUAGGUGCCGcGGUGCacccgaGGCUgACGg -3'
miRNA:   3'- uuaUAUCCACGGC-CUGCGg-----CCGA-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.