Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29809 | 3' | -55.9 | NC_006273.1 | + | 138432 | 1.06 | 0.006809 |
Target: 5'- aAAUAUAGGUGCCGGACGCCGGCUACGu -3' miRNA: 3'- -UUAUAUCCACGGCCUGCGGCCGAUGC- -5' |
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29809 | 3' | -55.9 | NC_006273.1 | + | 187204 | 0.79 | 0.334853 |
Target: 5'- ----gGGGUGCgGGugGCgGGCUGCGu -3' miRNA: 3'- uuauaUCCACGgCCugCGgCCGAUGC- -5' |
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29809 | 3' | -55.9 | NC_006273.1 | + | 962 | 0.76 | 0.486256 |
Target: 5'- ----gGGcGUGCUGGGCGCCGGCgcCGg -3' miRNA: 3'- uuauaUC-CACGGCCUGCGGCCGauGC- -5' |
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29809 | 3' | -55.9 | NC_006273.1 | + | 40900 | 0.73 | 0.663082 |
Target: 5'- ----gGGcGUGCUGGGCGCCGGCccgguaACGg -3' miRNA: 3'- uuauaUC-CACGGCCUGCGGCCGa-----UGC- -5' |
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29809 | 3' | -55.9 | NC_006273.1 | + | 115603 | 0.72 | 0.683007 |
Target: 5'- cGGUGcGGGUGCCGGGacagcgUGCCGGCgaACGu -3' miRNA: 3'- -UUAUaUCCACGGCCU------GCGGCCGa-UGC- -5' |
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29809 | 3' | -55.9 | NC_006273.1 | + | 41465 | 0.71 | 0.769691 |
Target: 5'- --gGUAGGUGUCGGG-GCCGGa-GCGg -3' miRNA: 3'- uuaUAUCCACGGCCUgCGGCCgaUGC- -5' |
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29809 | 3' | -55.9 | NC_006273.1 | + | 204192 | 0.71 | 0.778849 |
Target: 5'- ----cAGGgcaGCCuGGACGCCGGCcgGCa -3' miRNA: 3'- uuauaUCCa--CGG-CCUGCGGCCGa-UGc -5' |
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29809 | 3' | -55.9 | NC_006273.1 | + | 21204 | 0.71 | 0.741544 |
Target: 5'- aGGUAUGGGg---GGugGCCGGCUGCc -3' miRNA: 3'- -UUAUAUCCacggCCugCGGCCGAUGc -5' |
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29809 | 3' | -55.9 | NC_006273.1 | + | 120496 | 0.71 | 0.769691 |
Target: 5'- -----cGGUGCCGGccGCGCUagcgGGCUGCa -3' miRNA: 3'- uuauauCCACGGCC--UGCGG----CCGAUGc -5' |
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29809 | 3' | -55.9 | NC_006273.1 | + | 135984 | 0.7 | 0.796779 |
Target: 5'- ----gAGGagGCCGaGACGCUGcGCUACGu -3' miRNA: 3'- uuauaUCCa-CGGC-CUGCGGC-CGAUGC- -5' |
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29809 | 3' | -55.9 | NC_006273.1 | + | 164278 | 0.69 | 0.830862 |
Target: 5'- -----uGGUGCUGGcgGCGCCGGgUGCc -3' miRNA: 3'- uuauauCCACGGCC--UGCGGCCgAUGc -5' |
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29809 | 3' | -55.9 | NC_006273.1 | + | 192519 | 0.69 | 0.86952 |
Target: 5'- aGAUGUcGGUGCgCGaGACGCUGGUcACa -3' miRNA: 3'- -UUAUAuCCACG-GC-CUGCGGCCGaUGc -5' |
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29809 | 3' | -55.9 | NC_006273.1 | + | 33952 | 0.69 | 0.830862 |
Target: 5'- ----gAGGUGgCGGAuCGCCGGCa--- -3' miRNA: 3'- uuauaUCCACgGCCU-GCGGCCGaugc -5' |
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29809 | 3' | -55.9 | NC_006273.1 | + | 132858 | 0.69 | 0.86952 |
Target: 5'- -cUGUGGGcGCCGGACGuuGugaucaCUACGg -3' miRNA: 3'- uuAUAUCCaCGGCCUGCggCc-----GAUGC- -5' |
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29809 | 3' | -55.9 | NC_006273.1 | + | 68020 | 0.68 | 0.903085 |
Target: 5'- --cAUGGGUGgCGGAggacUGCCGGCa--- -3' miRNA: 3'- uuaUAUCCACgGCCU----GCGGCCGaugc -5' |
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29809 | 3' | -55.9 | NC_006273.1 | + | 105187 | 0.68 | 0.890309 |
Target: 5'- ----cAGGUaGCCGGAgaCGgCGGUUACGu -3' miRNA: 3'- uuauaUCCA-CGGCCU--GCgGCCGAUGC- -5' |
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29809 | 3' | -55.9 | NC_006273.1 | + | 161671 | 0.68 | 0.896808 |
Target: 5'- ----cGGG-GUCGGcgcucUGCCGGCUGCGg -3' miRNA: 3'- uuauaUCCaCGGCCu----GCGGCCGAUGC- -5' |
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29809 | 3' | -55.9 | NC_006273.1 | + | 81250 | 0.68 | 0.876661 |
Target: 5'- aGAUcgAGGUuuUGGugGCCGGCgugACa -3' miRNA: 3'- -UUAuaUCCAcgGCCugCGGCCGa--UGc -5' |
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29809 | 3' | -55.9 | NC_006273.1 | + | 234012 | 0.68 | 0.882908 |
Target: 5'- uGGUGUGGGUGCUGuuugugucuGugGCUGGCaugauugUGCGg -3' miRNA: 3'- -UUAUAUCCACGGC---------CugCGGCCG-------AUGC- -5' |
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29809 | 3' | -55.9 | NC_006273.1 | + | 133478 | 0.67 | 0.925935 |
Target: 5'- ----cGGcGUGCaggcgCGGACGCUGGCgGCGg -3' miRNA: 3'- uuauaUC-CACG-----GCCUGCGGCCGaUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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