miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29809 3' -55.9 NC_006273.1 + 962 0.76 0.486256
Target:  5'- ----gGGcGUGCUGGGCGCCGGCgcCGg -3'
miRNA:   3'- uuauaUC-CACGGCCUGCGGCCGauGC- -5'
29809 3' -55.9 NC_006273.1 + 21204 0.71 0.741544
Target:  5'- aGGUAUGGGg---GGugGCCGGCUGCc -3'
miRNA:   3'- -UUAUAUCCacggCCugCGGCCGAUGc -5'
29809 3' -55.9 NC_006273.1 + 22239 0.66 0.95715
Target:  5'- gAGUGUcAGaUGaCGGGCGCCGGCgaGCGa -3'
miRNA:   3'- -UUAUA-UCcACgGCCUGCGGCCGa-UGC- -5'
29809 3' -55.9 NC_006273.1 + 33952 0.69 0.830862
Target:  5'- ----gAGGUGgCGGAuCGCCGGCa--- -3'
miRNA:   3'- uuauaUCCACgGCCU-GCGGCCGaugc -5'
29809 3' -55.9 NC_006273.1 + 34669 0.66 0.95715
Target:  5'- --cAUGGcGUGCUugggauguuuGGGCGCCGGCg--- -3'
miRNA:   3'- uuaUAUC-CACGG----------CCUGCGGCCGaugc -5'
29809 3' -55.9 NC_006273.1 + 40900 0.73 0.663082
Target:  5'- ----gGGcGUGCUGGGCGCCGGCccgguaACGg -3'
miRNA:   3'- uuauaUC-CACGGCCUGCGGCCGa-----UGC- -5'
29809 3' -55.9 NC_006273.1 + 41465 0.71 0.769691
Target:  5'- --gGUAGGUGUCGGG-GCCGGa-GCGg -3'
miRNA:   3'- uuaUAUCCACGGCCUgCGGCCgaUGC- -5'
29809 3' -55.9 NC_006273.1 + 49973 0.67 0.935986
Target:  5'- -----cGGUGCUGGuccaccACGUCGGCcGCGa -3'
miRNA:   3'- uuauauCCACGGCC------UGCGGCCGaUGC- -5'
29809 3' -55.9 NC_006273.1 + 68020 0.68 0.903085
Target:  5'- --cAUGGGUGgCGGAggacUGCCGGCa--- -3'
miRNA:   3'- uuaUAUCCACgGCCU----GCGGCCGaugc -5'
29809 3' -55.9 NC_006273.1 + 70925 0.66 0.945124
Target:  5'- ----cGGGuUGCCuGGACGCCugGGCgcgACGc -3'
miRNA:   3'- uuauaUCC-ACGG-CCUGCGG--CCGa--UGC- -5'
29809 3' -55.9 NC_006273.1 + 81250 0.68 0.876661
Target:  5'- aGAUcgAGGUuuUGGugGCCGGCgugACa -3'
miRNA:   3'- -UUAuaUCCAcgGCCugCGGCCGa--UGc -5'
29809 3' -55.9 NC_006273.1 + 87971 0.66 0.95715
Target:  5'- --------cGCCGGACGCCGcGCcgACGc -3'
miRNA:   3'- uuauauccaCGGCCUGCGGC-CGa-UGC- -5'
29809 3' -55.9 NC_006273.1 + 88584 0.66 0.949354
Target:  5'- --aGUGGcG-GCCauGGGCGCCGGC-ACGc -3'
miRNA:   3'- uuaUAUC-CaCGG--CCUGCGGCCGaUGC- -5'
29809 3' -55.9 NC_006273.1 + 105187 0.68 0.890309
Target:  5'- ----cAGGUaGCCGGAgaCGgCGGUUACGu -3'
miRNA:   3'- uuauaUCCA-CGGCCU--GCgGCCGAUGC- -5'
29809 3' -55.9 NC_006273.1 + 106219 0.67 0.920565
Target:  5'- cGUAcAGGUGCCGcggguggccagcGGCGCCGGUUuGCc -3'
miRNA:   3'- uUAUaUCCACGGC------------CUGCGGCCGA-UGc -5'
29809 3' -55.9 NC_006273.1 + 115603 0.72 0.683007
Target:  5'- cGGUGcGGGUGCCGGGacagcgUGCCGGCgaACGu -3'
miRNA:   3'- -UUAUaUCCACGGCCU------GCGGCCGa-UGC- -5'
29809 3' -55.9 NC_006273.1 + 120496 0.71 0.769691
Target:  5'- -----cGGUGCCGGccGCGCUagcgGGCUGCa -3'
miRNA:   3'- uuauauCCACGGCC--UGCGG----CCGAUGc -5'
29809 3' -55.9 NC_006273.1 + 123931 0.67 0.920565
Target:  5'- --gGUAGGUGCCGcGGUGCacccgaGGCUgACGg -3'
miRNA:   3'- uuaUAUCCACGGC-CUGCGg-----CCGA-UGC- -5'
29809 3' -55.9 NC_006273.1 + 132120 0.66 0.960722
Target:  5'- uAGUcgAGGUGCUGGGCGU--GUUGCa -3'
miRNA:   3'- -UUAuaUCCACGGCCUGCGgcCGAUGc -5'
29809 3' -55.9 NC_006273.1 + 132858 0.69 0.86952
Target:  5'- -cUGUGGGcGCCGGACGuuGugaucaCUACGg -3'
miRNA:   3'- uuAUAUCCaCGGCCUGCggCc-----GAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.