miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29809 3' -55.9 NC_006273.1 + 133478 0.67 0.925935
Target:  5'- ----cGGcGUGCaggcgCGGACGCUGGCgGCGg -3'
miRNA:   3'- uuauaUC-CACG-----GCCUGCGGCCGaUGC- -5'
29809 3' -55.9 NC_006273.1 + 135984 0.7 0.796779
Target:  5'- ----gAGGagGCCGaGACGCUGcGCUACGu -3'
miRNA:   3'- uuauaUCCa-CGGC-CUGCGGC-CGAUGC- -5'
29809 3' -55.9 NC_006273.1 + 138432 1.06 0.006809
Target:  5'- aAAUAUAGGUGCCGGACGCCGGCUACGu -3'
miRNA:   3'- -UUAUAUCCACGGCCUGCGGCCGAUGC- -5'
29809 3' -55.9 NC_006273.1 + 144810 0.66 0.940669
Target:  5'- -----cGGUGCCGGGCGUgGaGUUucGCGg -3'
miRNA:   3'- uuauauCCACGGCCUGCGgC-CGA--UGC- -5'
29809 3' -55.9 NC_006273.1 + 145555 0.66 0.949354
Target:  5'- ----gGGGUuCCGGGCGgCGGUgcugGCGg -3'
miRNA:   3'- uuauaUCCAcGGCCUGCgGCCGa---UGC- -5'
29809 3' -55.9 NC_006273.1 + 148654 0.66 0.949354
Target:  5'- -----uGGcGCCGGAgGCCGGCcuggaggucUGCGc -3'
miRNA:   3'- uuauauCCaCGGCCUgCGGCCG---------AUGC- -5'
29809 3' -55.9 NC_006273.1 + 149723 0.67 0.920565
Target:  5'- --cGUGGGUcauguccuggGCCGGcUGCCGGCgcuguUACGg -3'
miRNA:   3'- uuaUAUCCA----------CGGCCuGCGGCCG-----AUGC- -5'
29809 3' -55.9 NC_006273.1 + 152609 0.66 0.940669
Target:  5'- ----cGGGUGUgucuCGGugGCCcGCUGCa -3'
miRNA:   3'- uuauaUCCACG----GCCugCGGcCGAUGc -5'
29809 3' -55.9 NC_006273.1 + 153610 0.67 0.914966
Target:  5'- --gGUGcGGUcGCgGGugGCCGGCgucaGCGu -3'
miRNA:   3'- uuaUAU-CCA-CGgCCugCGGCCGa---UGC- -5'
29809 3' -55.9 NC_006273.1 + 161671 0.68 0.896808
Target:  5'- ----cGGG-GUCGGcgcucUGCCGGCUGCGg -3'
miRNA:   3'- uuauaUCCaCGGCCu----GCGGCCGAUGC- -5'
29809 3' -55.9 NC_006273.1 + 164278 0.69 0.830862
Target:  5'- -----uGGUGCUGGcgGCGCCGGgUGCc -3'
miRNA:   3'- uuauauCCACGGCC--UGCGGCCgAUGc -5'
29809 3' -55.9 NC_006273.1 + 164669 0.67 0.920565
Target:  5'- cGUGUAcGUGCuCGGGUGCCGGgUACa -3'
miRNA:   3'- uUAUAUcCACG-GCCUGCGGCCgAUGc -5'
29809 3' -55.9 NC_006273.1 + 178815 0.66 0.940669
Target:  5'- ----aAGGUGgaUCGGGCGgCGGCgGCGg -3'
miRNA:   3'- uuauaUCCAC--GGCCUGCgGCCGaUGC- -5'
29809 3' -55.9 NC_006273.1 + 187204 0.79 0.334853
Target:  5'- ----gGGGUGCgGGugGCgGGCUGCGu -3'
miRNA:   3'- uuauaUCCACGgCCugCGgCCGAUGC- -5'
29809 3' -55.9 NC_006273.1 + 189881 0.66 0.960722
Target:  5'- ----cGGGcggaccGCCGGGCaucgccGUCGGCUGCGa -3'
miRNA:   3'- uuauaUCCa-----CGGCCUG------CGGCCGAUGC- -5'
29809 3' -55.9 NC_006273.1 + 192519 0.69 0.86952
Target:  5'- aGAUGUcGGUGCgCGaGACGCUGGUcACa -3'
miRNA:   3'- -UUAUAuCCACG-GC-CUGCGGCCGaUGc -5'
29809 3' -55.9 NC_006273.1 + 204192 0.71 0.778849
Target:  5'- ----cAGGgcaGCCuGGACGCCGGCcgGCa -3'
miRNA:   3'- uuauaUCCa--CGG-CCUGCGGCCGa-UGc -5'
29809 3' -55.9 NC_006273.1 + 204702 0.66 0.95678
Target:  5'- ---uUGGGUgucGCCGGcgagccccgaggcGCGCCcGCUGCGa -3'
miRNA:   3'- uuauAUCCA---CGGCC-------------UGCGGcCGAUGC- -5'
29809 3' -55.9 NC_006273.1 + 206127 0.66 0.960722
Target:  5'- ----gGGGUGUCGG-CGUgGGC-ACGg -3'
miRNA:   3'- uuauaUCCACGGCCuGCGgCCGaUGC- -5'
29809 3' -55.9 NC_006273.1 + 234012 0.68 0.882908
Target:  5'- uGGUGUGGGUGCUGuuugugucuGugGCUGGCaugauugUGCGg -3'
miRNA:   3'- -UUAUAUCCACGGC---------CugCGGCCG-------AUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.