miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29809 3' -55.9 NC_006273.1 + 132120 0.66 0.960722
Target:  5'- uAGUcgAGGUGCUGGGCGU--GUUGCa -3'
miRNA:   3'- -UUAuaUCCACGGCCUGCGgcCGAUGc -5'
29809 3' -55.9 NC_006273.1 + 164669 0.67 0.920565
Target:  5'- cGUGUAcGUGCuCGGGUGCCGGgUACa -3'
miRNA:   3'- uUAUAUcCACG-GCCUGCGGCCgAUGc -5'
29809 3' -55.9 NC_006273.1 + 133478 0.67 0.925935
Target:  5'- ----cGGcGUGCaggcgCGGACGCUGGCgGCGg -3'
miRNA:   3'- uuauaUC-CACG-----GCCUGCGGCCGaUGC- -5'
29809 3' -55.9 NC_006273.1 + 144810 0.66 0.940669
Target:  5'- -----cGGUGCCGGGCGUgGaGUUucGCGg -3'
miRNA:   3'- uuauauCCACGGCCUGCGgC-CGA--UGC- -5'
29809 3' -55.9 NC_006273.1 + 152609 0.66 0.940669
Target:  5'- ----cGGGUGUgucuCGGugGCCcGCUGCa -3'
miRNA:   3'- uuauaUCCACG----GCCugCGGcCGAUGc -5'
29809 3' -55.9 NC_006273.1 + 88584 0.66 0.949354
Target:  5'- --aGUGGcG-GCCauGGGCGCCGGC-ACGc -3'
miRNA:   3'- uuaUAUC-CaCGG--CCUGCGGCCGaUGC- -5'
29809 3' -55.9 NC_006273.1 + 34669 0.66 0.95715
Target:  5'- --cAUGGcGUGCUugggauguuuGGGCGCCGGCg--- -3'
miRNA:   3'- uuaUAUC-CACGG----------CCUGCGGCCGaugc -5'
29809 3' -55.9 NC_006273.1 + 87971 0.66 0.95715
Target:  5'- --------cGCCGGACGCCGcGCcgACGc -3'
miRNA:   3'- uuauauccaCGGCCUGCGGC-CGa-UGC- -5'
29809 3' -55.9 NC_006273.1 + 22239 0.66 0.95715
Target:  5'- gAGUGUcAGaUGaCGGGCGCCGGCgaGCGa -3'
miRNA:   3'- -UUAUA-UCcACgGCCUGCGGCCGa-UGC- -5'
29809 3' -55.9 NC_006273.1 + 149723 0.67 0.920565
Target:  5'- --cGUGGGUcauguccuggGCCGGcUGCCGGCgcuguUACGg -3'
miRNA:   3'- uuaUAUCCA----------CGGCCuGCGGCCG-----AUGC- -5'
29809 3' -55.9 NC_006273.1 + 123931 0.67 0.920565
Target:  5'- --gGUAGGUGCCGcGGUGCacccgaGGCUgACGg -3'
miRNA:   3'- uuaUAUCCACGGC-CUGCGg-----CCGA-UGC- -5'
29809 3' -55.9 NC_006273.1 + 161671 0.68 0.896808
Target:  5'- ----cGGG-GUCGGcgcucUGCCGGCUGCGg -3'
miRNA:   3'- uuauaUCCaCGGCCu----GCGGCCGAUGC- -5'
29809 3' -55.9 NC_006273.1 + 115603 0.72 0.683007
Target:  5'- cGGUGcGGGUGCCGGGacagcgUGCCGGCgaACGu -3'
miRNA:   3'- -UUAUaUCCACGGCCU------GCGGCCGa-UGC- -5'
29809 3' -55.9 NC_006273.1 + 21204 0.71 0.741544
Target:  5'- aGGUAUGGGg---GGugGCCGGCUGCc -3'
miRNA:   3'- -UUAUAUCCacggCCugCGGCCGAUGc -5'
29809 3' -55.9 NC_006273.1 + 41465 0.71 0.769691
Target:  5'- --gGUAGGUGUCGGG-GCCGGa-GCGg -3'
miRNA:   3'- uuaUAUCCACGGCCUgCGGCCgaUGC- -5'
29809 3' -55.9 NC_006273.1 + 204192 0.71 0.778849
Target:  5'- ----cAGGgcaGCCuGGACGCCGGCcgGCa -3'
miRNA:   3'- uuauaUCCa--CGG-CCUGCGGCCGa-UGc -5'
29809 3' -55.9 NC_006273.1 + 135984 0.7 0.796779
Target:  5'- ----gAGGagGCCGaGACGCUGcGCUACGu -3'
miRNA:   3'- uuauaUCCa-CGGC-CUGCGGC-CGAUGC- -5'
29809 3' -55.9 NC_006273.1 + 33952 0.69 0.830862
Target:  5'- ----gAGGUGgCGGAuCGCCGGCa--- -3'
miRNA:   3'- uuauaUCCACgGCCU-GCGGCCGaugc -5'
29809 3' -55.9 NC_006273.1 + 132858 0.69 0.86952
Target:  5'- -cUGUGGGcGCCGGACGuuGugaucaCUACGg -3'
miRNA:   3'- uuAUAUCCaCGGCCUGCggCc-----GAUGC- -5'
29809 3' -55.9 NC_006273.1 + 81250 0.68 0.876661
Target:  5'- aGAUcgAGGUuuUGGugGCCGGCgugACa -3'
miRNA:   3'- -UUAuaUCCAcgGCCugCGGCCGa--UGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.