miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29809 3' -55.9 NC_006273.1 + 138432 1.06 0.006809
Target:  5'- aAAUAUAGGUGCCGGACGCCGGCUACGu -3'
miRNA:   3'- -UUAUAUCCACGGCCUGCGGCCGAUGC- -5'
29809 3' -55.9 NC_006273.1 + 49973 0.67 0.935986
Target:  5'- -----cGGUGCUGGuccaccACGUCGGCcGCGa -3'
miRNA:   3'- uuauauCCACGGCC------UGCGGCCGaUGC- -5'
29809 3' -55.9 NC_006273.1 + 68020 0.68 0.903085
Target:  5'- --cAUGGGUGgCGGAggacUGCCGGCa--- -3'
miRNA:   3'- uuaUAUCCACgGCCU----GCGGCCGaugc -5'
29809 3' -55.9 NC_006273.1 + 105187 0.68 0.890309
Target:  5'- ----cAGGUaGCCGGAgaCGgCGGUUACGu -3'
miRNA:   3'- uuauaUCCA-CGGCCU--GCgGCCGAUGC- -5'
29809 3' -55.9 NC_006273.1 + 192519 0.69 0.86952
Target:  5'- aGAUGUcGGUGCgCGaGACGCUGGUcACa -3'
miRNA:   3'- -UUAUAuCCACG-GC-CUGCGGCCGaUGc -5'
29809 3' -55.9 NC_006273.1 + 164278 0.69 0.830862
Target:  5'- -----uGGUGCUGGcgGCGCCGGgUGCc -3'
miRNA:   3'- uuauauCCACGGCC--UGCGGCCgAUGc -5'
29809 3' -55.9 NC_006273.1 + 204702 0.66 0.95678
Target:  5'- ---uUGGGUgucGCCGGcgagccccgaggcGCGCCcGCUGCGa -3'
miRNA:   3'- uuauAUCCA---CGGCC-------------UGCGGcCGAUGC- -5'
29809 3' -55.9 NC_006273.1 + 70925 0.66 0.945124
Target:  5'- ----cGGGuUGCCuGGACGCCugGGCgcgACGc -3'
miRNA:   3'- uuauaUCC-ACGG-CCUGCGG--CCGa--UGC- -5'
29809 3' -55.9 NC_006273.1 + 106219 0.67 0.920565
Target:  5'- cGUAcAGGUGCCGcggguggccagcGGCGCCGGUUuGCc -3'
miRNA:   3'- uUAUaUCCACGGC------------CUGCGGCCGA-UGc -5'
29809 3' -55.9 NC_006273.1 + 234012 0.68 0.882908
Target:  5'- uGGUGUGGGUGCUGuuugugucuGugGCUGGCaugauugUGCGg -3'
miRNA:   3'- -UUAUAUCCACGGC---------CugCGGCCG-------AUGC- -5'
29809 3' -55.9 NC_006273.1 + 187204 0.79 0.334853
Target:  5'- ----gGGGUGCgGGugGCgGGCUGCGu -3'
miRNA:   3'- uuauaUCCACGgCCugCGgCCGAUGC- -5'
29809 3' -55.9 NC_006273.1 + 145555 0.66 0.949354
Target:  5'- ----gGGGUuCCGGGCGgCGGUgcugGCGg -3'
miRNA:   3'- uuauaUCCAcGGCCUGCgGCCGa---UGC- -5'
29809 3' -55.9 NC_006273.1 + 40900 0.73 0.663082
Target:  5'- ----gGGcGUGCUGGGCGCCGGCccgguaACGg -3'
miRNA:   3'- uuauaUC-CACGGCCUGCGGCCGa-----UGC- -5'
29809 3' -55.9 NC_006273.1 + 153610 0.67 0.914966
Target:  5'- --gGUGcGGUcGCgGGugGCCGGCgucaGCGu -3'
miRNA:   3'- uuaUAU-CCA-CGgCCugCGGCCGa---UGC- -5'
29809 3' -55.9 NC_006273.1 + 148654 0.66 0.949354
Target:  5'- -----uGGcGCCGGAgGCCGGCcuggaggucUGCGc -3'
miRNA:   3'- uuauauCCaCGGCCUgCGGCCG---------AUGC- -5'
29809 3' -55.9 NC_006273.1 + 120496 0.71 0.769691
Target:  5'- -----cGGUGCCGGccGCGCUagcgGGCUGCa -3'
miRNA:   3'- uuauauCCACGGCC--UGCGG----CCGAUGc -5'
29809 3' -55.9 NC_006273.1 + 178815 0.66 0.940669
Target:  5'- ----aAGGUGgaUCGGGCGgCGGCgGCGg -3'
miRNA:   3'- uuauaUCCAC--GGCCUGCgGCCGaUGC- -5'
29809 3' -55.9 NC_006273.1 + 144810 0.66 0.940669
Target:  5'- -----cGGUGCCGGGCGUgGaGUUucGCGg -3'
miRNA:   3'- uuauauCCACGGCCUGCGgC-CGA--UGC- -5'
29809 3' -55.9 NC_006273.1 + 133478 0.67 0.925935
Target:  5'- ----cGGcGUGCaggcgCGGACGCUGGCgGCGg -3'
miRNA:   3'- uuauaUC-CACG-----GCCUGCGGCCGaUGC- -5'
29809 3' -55.9 NC_006273.1 + 164669 0.67 0.920565
Target:  5'- cGUGUAcGUGCuCGGGUGCCGGgUACa -3'
miRNA:   3'- uUAUAUcCACG-GCCUGCGGCCgAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.