miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29809 5' -52.7 NC_006273.1 + 56217 0.66 0.991944
Target:  5'- aGGCUggcgcuGCGcCGCCUAAaguguccgauccGCGCGGGa-- -3'
miRNA:   3'- -CCGAau----CGC-GUGGGUU------------UGCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 160138 0.66 0.991944
Target:  5'- cGGCggccAGCGCuucgUCCAuagguacuuGACGCGGGUg- -3'
miRNA:   3'- -CCGaa--UCGCGu---GGGU---------UUGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 135921 0.66 0.991944
Target:  5'- cGGUgguaauGCGCugCCAGACGCccgauuacgAGGa-- -3'
miRNA:   3'- -CCGaau---CGCGugGGUUUGCG---------UCCaaa -5'
29809 5' -52.7 NC_006273.1 + 163035 0.66 0.991944
Target:  5'- ----cAGCaGCGCCCAcAGCGCGGGc-- -3'
miRNA:   3'- ccgaaUCG-CGUGGGU-UUGCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 202685 0.66 0.991944
Target:  5'- cGUggAGCGCGCU---GCGCAGGg-- -3'
miRNA:   3'- cCGaaUCGCGUGGguuUGCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 148023 0.66 0.991944
Target:  5'- uGGC---GCGCACCUucACGCcGGUg- -3'
miRNA:   3'- -CCGaauCGCGUGGGuuUGCGuCCAaa -5'
29809 5' -52.7 NC_006273.1 + 94516 0.66 0.991944
Target:  5'- cGGCccgGGgGgACCCGAGCGgGGGc-- -3'
miRNA:   3'- -CCGaa-UCgCgUGGGUUUGCgUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 41446 0.66 0.991944
Target:  5'- gGGUUUGG-GUACCCGcgAAgGUAGGUg- -3'
miRNA:   3'- -CCGAAUCgCGUGGGU--UUgCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 59866 0.66 0.991944
Target:  5'- uGGCUUugaaauaaAGCG-ACCCAAcaGCAGGUc- -3'
miRNA:   3'- -CCGAA--------UCGCgUGGGUUugCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 4996 0.66 0.990792
Target:  5'- uGGU--AGCuCugCCGAGCGCGGGc-- -3'
miRNA:   3'- -CCGaaUCGcGugGGUUUGCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 186262 0.66 0.990792
Target:  5'- cGGUUUAGCcugcguCACCgAGGCGgAGGUg- -3'
miRNA:   3'- -CCGAAUCGc-----GUGGgUUUGCgUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 63764 0.66 0.990792
Target:  5'- uGGCcgGGCGCGCCUcu-CGgAGGa-- -3'
miRNA:   3'- -CCGaaUCGCGUGGGuuuGCgUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 83411 0.66 0.990792
Target:  5'- cGGCccGGCgGCGCCCGA--GCGGGa-- -3'
miRNA:   3'- -CCGaaUCG-CGUGGGUUugCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 176144 0.66 0.989515
Target:  5'- cGCUgccAGCgGCGCCCA---GCAGGUa- -3'
miRNA:   3'- cCGAa--UCG-CGUGGGUuugCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 177261 0.66 0.989515
Target:  5'- cGCUgcGCGUGCCCGuggugaauuACGCGuGGUUg -3'
miRNA:   3'- cCGAauCGCGUGGGUu--------UGCGU-CCAAa -5'
29809 5' -52.7 NC_006273.1 + 1918 0.66 0.98938
Target:  5'- cGGCUggcUGGCGCugggcgcggugcuGCCCGcGCGguGGc-- -3'
miRNA:   3'- -CCGA---AUCGCG-------------UGGGUuUGCguCCaaa -5'
29809 5' -52.7 NC_006273.1 + 196810 0.66 0.98938
Target:  5'- cGGCUggcUGGCGCugggcgcggugcuGCCCGcGCGguGGc-- -3'
miRNA:   3'- -CCGA---AUCGCG-------------UGGGUuUGCguCCaaa -5'
29809 5' -52.7 NC_006273.1 + 90264 0.66 0.988103
Target:  5'- cGGCggcGGCGaauCGCCCGGGCugccccGCAGGUg- -3'
miRNA:   3'- -CCGaa-UCGC---GUGGGUUUG------CGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 93949 0.66 0.986548
Target:  5'- cGCgggaGGCGCGCCCugcgcauGCGCcGGUa- -3'
miRNA:   3'- cCGaa--UCGCGUGGGuu-----UGCGuCCAaa -5'
29809 5' -52.7 NC_006273.1 + 110825 0.66 0.986548
Target:  5'- uGGUUUgcGGUgGCAUCCAAACGUgAGGUa- -3'
miRNA:   3'- -CCGAA--UCG-CGUGGGUUUGCG-UCCAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.