miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29809 5' -52.7 NC_006273.1 + 59866 0.66 0.991944
Target:  5'- uGGCUUugaaauaaAGCG-ACCCAAcaGCAGGUc- -3'
miRNA:   3'- -CCGAA--------UCGCgUGGGUUugCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 1918 0.66 0.98938
Target:  5'- cGGCUggcUGGCGCugggcgcggugcuGCCCGcGCGguGGc-- -3'
miRNA:   3'- -CCGA---AUCGCG-------------UGGGUuUGCguCCaaa -5'
29809 5' -52.7 NC_006273.1 + 90264 0.66 0.988103
Target:  5'- cGGCggcGGCGaauCGCCCGGGCugccccGCAGGUg- -3'
miRNA:   3'- -CCGaa-UCGC---GUGGGUUUG------CGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 160138 0.66 0.991944
Target:  5'- cGGCggccAGCGCuucgUCCAuagguacuuGACGCGGGUg- -3'
miRNA:   3'- -CCGaa--UCGCGu---GGGU---------UUGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 56217 0.66 0.991944
Target:  5'- aGGCUggcgcuGCGcCGCCUAAaguguccgauccGCGCGGGa-- -3'
miRNA:   3'- -CCGAau----CGC-GUGGGUU------------UGCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 41446 0.66 0.991944
Target:  5'- gGGUUUGG-GUACCCGcgAAgGUAGGUg- -3'
miRNA:   3'- -CCGAAUCgCGUGGGU--UUgCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 63764 0.66 0.990792
Target:  5'- uGGCcgGGCGCGCCUcu-CGgAGGa-- -3'
miRNA:   3'- -CCGaaUCGCGUGGGuuuGCgUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 89987 0.67 0.97375
Target:  5'- uGCUUGG-GCACCaCGGGCaaGCGGGUg- -3'
miRNA:   3'- cCGAAUCgCGUGG-GUUUG--CGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 216375 0.67 0.980942
Target:  5'- uGGUUgucuugcAGCGCGCCCGugGGCaGUAGGUc- -3'
miRNA:   3'- -CCGAa------UCGCGUGGGU--UUG-CGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 151786 0.67 0.980942
Target:  5'- cGGCgucgcGCGCGCCCAGGCuCAuGGa-- -3'
miRNA:   3'- -CCGaau--CGCGUGGGUUUGcGU-CCaaa -5'
29809 5' -52.7 NC_006273.1 + 133027 0.67 0.978732
Target:  5'- aGGCUUuguGCGCGCCCAAcuggaucuGCGUAa---- -3'
miRNA:   3'- -CCGAAu--CGCGUGGGUU--------UGCGUccaaa -5'
29809 5' -52.7 NC_006273.1 + 195812 0.67 0.978732
Target:  5'- cGCgcuGCGCGCUCGucaGCAGGUa- -3'
miRNA:   3'- cCGaauCGCGUGGGUuugCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 39174 0.67 0.97375
Target:  5'- uGGCUgcgcGGCGuCACCCGcGCGUAGa--- -3'
miRNA:   3'- -CCGAa---UCGC-GUGGGUuUGCGUCcaaa -5'
29809 5' -52.7 NC_006273.1 + 212426 0.67 0.97375
Target:  5'- cGGCguacuGCuGCACCCAGACGUGGc--- -3'
miRNA:   3'- -CCGaau--CG-CGUGGGUUUGCGUCcaaa -5'
29809 5' -52.7 NC_006273.1 + 234067 0.67 0.97375
Target:  5'- uGGCUgcgcGGCGuCACCCGcGCGUAGa--- -3'
miRNA:   3'- -CCGAa---UCGC-GUGGGUuUGCGUCcaaa -5'
29809 5' -52.7 NC_006273.1 + 58648 0.67 0.97375
Target:  5'- --aUUAGCGCGUCCAAGCGCGcGUUg -3'
miRNA:   3'- ccgAAUCGCGUGGGUUUGCGUcCAAa -5'
29809 5' -52.7 NC_006273.1 + 208809 0.67 0.976337
Target:  5'- gGGCgcugUGGCGCacagguugaGCCCG-GCGguGGUg- -3'
miRNA:   3'- -CCGa---AUCGCG---------UGGGUuUGCguCCAaa -5'
29809 5' -52.7 NC_006273.1 + 39579 0.67 0.978732
Target:  5'- uGCUgacgAGCGCGCa---GCGCGGGUa- -3'
miRNA:   3'- cCGAa---UCGCGUGgguuUGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 59097 0.67 0.980942
Target:  5'- aGCgagUAGCGCugCuCAcGCGCAcGGUa- -3'
miRNA:   3'- cCGa--AUCGCGugG-GUuUGCGU-CCAaa -5'
29809 5' -52.7 NC_006273.1 + 123095 0.67 0.980942
Target:  5'- cGGCU-GGCGC-CUCGGugcgguCGCAGGUc- -3'
miRNA:   3'- -CCGAaUCGCGuGGGUUu-----GCGUCCAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.