miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29809 5' -52.7 NC_006273.1 + 138469 1.07 0.010185
Target:  5'- gGGCUUAGCGCACCCAAACGCAGGUUUc -3'
miRNA:   3'- -CCGAAUCGCGUGGGUUUGCGUCCAAA- -5'
29809 5' -52.7 NC_006273.1 + 37992 0.75 0.683355
Target:  5'- cGGCUc-GCGCGCCCAcagcgcggcGCGCGGGUg- -3'
miRNA:   3'- -CCGAauCGCGUGGGUu--------UGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 232885 0.75 0.683355
Target:  5'- cGGCUc-GCGCGCCCAcagcgcggcGCGCGGGUg- -3'
miRNA:   3'- -CCGAauCGCGUGGGUu--------UGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 27465 0.74 0.723845
Target:  5'- uGGCuUUGGCgGCACCUucucagaaaucgAAGCGCAGGUa- -3'
miRNA:   3'- -CCG-AAUCG-CGUGGG------------UUUGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 143179 0.74 0.753401
Target:  5'- aGGUUUGGCGC-CCguAggcGCGCGGGUUUu -3'
miRNA:   3'- -CCGAAUCGCGuGGguU---UGCGUCCAAA- -5'
29809 5' -52.7 NC_006273.1 + 152775 0.74 0.763047
Target:  5'- cGCggAGCGCGCCCAGcACGCccGUUUg -3'
miRNA:   3'- cCGaaUCGCGUGGGUU-UGCGucCAAA- -5'
29809 5' -52.7 NC_006273.1 + 180165 0.73 0.791238
Target:  5'- cGCUUAGUGUGCCCAGAgcuacCGCAcGGUa- -3'
miRNA:   3'- cCGAAUCGCGUGGGUUU-----GCGU-CCAaa -5'
29809 5' -52.7 NC_006273.1 + 49255 0.72 0.835182
Target:  5'- uGGCccAGCGCGCCCAacAACuGguGGUa- -3'
miRNA:   3'- -CCGaaUCGCGUGGGU--UUG-CguCCAaa -5'
29809 5' -52.7 NC_006273.1 + 148739 0.71 0.866247
Target:  5'- cGCUcGGCGUGCCCGaggaugaGugGCAGGUc- -3'
miRNA:   3'- cCGAaUCGCGUGGGU-------UugCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 14117 0.71 0.874434
Target:  5'- cGGCUguuucuGCGCACcgguCCGAACGCuAGGUc- -3'
miRNA:   3'- -CCGAau----CGCGUG----GGUUUGCG-UCCAaa -5'
29809 5' -52.7 NC_006273.1 + 34298 0.71 0.895383
Target:  5'- aGGCacagGGUGCcguCCAGGCGCAGGUa- -3'
miRNA:   3'- -CCGaa--UCGCGug-GGUUUGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 137217 0.7 0.901902
Target:  5'- aGCgcgAGCGCucggcGCCCAAAcCGCAGGa-- -3'
miRNA:   3'- cCGaa-UCGCG-----UGGGUUU-GCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 33807 0.7 0.908184
Target:  5'- aGGUacaUGGCGUAgCCGcGACGCGGGUUg -3'
miRNA:   3'- -CCGa--AUCGCGUgGGU-UUGCGUCCAAa -5'
29809 5' -52.7 NC_006273.1 + 42418 0.7 0.922276
Target:  5'- cGGCgagcGCGCGCCCAAAaaggugugcgccgacUGCGGGa-- -3'
miRNA:   3'- -CCGaau-CGCGUGGGUUU---------------GCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 131657 0.7 0.92558
Target:  5'- uGGCUUAcgacgcugacGCgGCGCCCgAAGCGCAGuGUa- -3'
miRNA:   3'- -CCGAAU----------CG-CGUGGG-UUUGCGUC-CAaa -5'
29809 5' -52.7 NC_006273.1 + 127181 0.69 0.935464
Target:  5'- cGGCUcgucGGCauccaugGCGCCCAAACGC-GGUa- -3'
miRNA:   3'- -CCGAa---UCG-------CGUGGGUUUGCGuCCAaa -5'
29809 5' -52.7 NC_006273.1 + 153628 0.69 0.940785
Target:  5'- cGGCgucAGCGUucgcaGCCCGGcuccGCGCAGGg-- -3'
miRNA:   3'- -CCGaa-UCGCG-----UGGGUU----UGCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 26374 0.69 0.940785
Target:  5'- cGCUUucAGCGUACUCAuuagcGCGCuGGUUUg -3'
miRNA:   3'- cCGAA--UCGCGUGGGUu----UGCGuCCAAA- -5'
29809 5' -52.7 NC_006273.1 + 141443 0.69 0.940785
Target:  5'- cGCagGGCGCGCCUcc-CGCGGGUc- -3'
miRNA:   3'- cCGaaUCGCGUGGGuuuGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 115923 0.69 0.944019
Target:  5'- cGCUgcacaaAGCGCgucagcaguccgccGCUCAAGCGCGGGUg- -3'
miRNA:   3'- cCGAa-----UCGCG--------------UGGGUUUGCGUCCAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.