Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29809 | 5' | -52.7 | NC_006273.1 | + | 219262 | 0.69 | 0.944921 |
Target: 5'- cGGCaUGGUGCugCCGGGCcgcaccuGCAGGa-- -3' miRNA: 3'- -CCGaAUCGCGugGGUUUG-------CGUCCaaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 196924 | 0.69 | 0.945368 |
Target: 5'- cGGCggGGaCGCGCCgugcgCGAugGCAGGa-- -3' miRNA: 3'- -CCGaaUC-GCGUGG-----GUUugCGUCCaaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 2031 | 0.69 | 0.945368 |
Target: 5'- cGGCggGGaCGCGCCgugcgCGAugGCAGGa-- -3' miRNA: 3'- -CCGaaUC-GCGUGG-----GUUugCGUCCaaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 98444 | 0.69 | 0.945368 |
Target: 5'- cGGCgauGCGCGCCCGAuaagcguccaACGCccGGUa- -3' miRNA: 3'- -CCGaauCGCGUGGGUU----------UGCGu-CCAaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 38125 | 0.68 | 0.957696 |
Target: 5'- aGCgccAGCGCGCCCAGcacgcccgcGCGCAGa--- -3' miRNA: 3'- cCGaa-UCGCGUGGGUU---------UGCGUCcaaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 233018 | 0.68 | 0.957696 |
Target: 5'- aGCgccAGCGCGCCCAGcacgcccgcGCGCAGa--- -3' miRNA: 3'- cCGaa-UCGCGUGGGUU---------UGCGUCcaaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 132790 | 0.68 | 0.961343 |
Target: 5'- cGUUUuaCGCGCCguGGCGCAGGUg- -3' miRNA: 3'- cCGAAucGCGUGGguUUGCGUCCAaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 206920 | 0.68 | 0.964766 |
Target: 5'- aGGCUaGGCccGUACaCCAGACGCAGa--- -3' miRNA: 3'- -CCGAaUCG--CGUG-GGUUUGCGUCcaaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 118277 | 0.68 | 0.964766 |
Target: 5'- aGCUgAGCGCGCUCAGGCcgGCGuGGUg- -3' miRNA: 3'- cCGAaUCGCGUGGGUUUG--CGU-CCAaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 188981 | 0.68 | 0.964766 |
Target: 5'- gGGC--GGCGUGCUCAGguucuuacgcgGCGCGGGUa- -3' miRNA: 3'- -CCGaaUCGCGUGGGUU-----------UGCGUCCAaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 76162 | 0.68 | 0.965097 |
Target: 5'- cGGCUaucgguucGCGCGCUCGucuuuucuucgauguGCGCAGGUUUc -3' miRNA: 3'- -CCGAau------CGCGUGGGUu--------------UGCGUCCAAA- -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 89382 | 0.68 | 0.967971 |
Target: 5'- cGCUUAGCcacCACCUGGACGgGGGg-- -3' miRNA: 3'- cCGAAUCGc--GUGGGUUUGCgUCCaaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 167400 | 0.68 | 0.970088 |
Target: 5'- gGGCagAGCGuCGCCCAGACagacuuccacagugGCGGGc-- -3' miRNA: 3'- -CCGaaUCGC-GUGGGUUUG--------------CGUCCaaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 233568 | 0.68 | 0.970382 |
Target: 5'- cGCgUUGGCGCGCCaacaguaagguGACGaCAGGUUg -3' miRNA: 3'- cCG-AAUCGCGUGGgu---------UUGC-GUCCAAa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 207819 | 0.68 | 0.970963 |
Target: 5'- cGCUUAGCGCGaaaacugucCCCAAccaugacaGCGCcGGUg- -3' miRNA: 3'- cCGAAUCGCGU---------GGGUU--------UGCGuCCAaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 58648 | 0.67 | 0.97375 |
Target: 5'- --aUUAGCGCGUCCAAGCGCGcGUUg -3' miRNA: 3'- ccgAAUCGCGUGGGUUUGCGUcCAAa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 234067 | 0.67 | 0.97375 |
Target: 5'- uGGCUgcgcGGCGuCACCCGcGCGUAGa--- -3' miRNA: 3'- -CCGAa---UCGC-GUGGGUuUGCGUCcaaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 212426 | 0.67 | 0.97375 |
Target: 5'- cGGCguacuGCuGCACCCAGACGUGGc--- -3' miRNA: 3'- -CCGaau--CG-CGUGGGUUUGCGUCcaaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 39174 | 0.67 | 0.97375 |
Target: 5'- uGGCUgcgcGGCGuCACCCGcGCGUAGa--- -3' miRNA: 3'- -CCGAa---UCGC-GUGGGUuUGCGUCcaaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 89987 | 0.67 | 0.97375 |
Target: 5'- uGCUUGG-GCACCaCGGGCaaGCGGGUg- -3' miRNA: 3'- cCGAAUCgCGUGG-GUUUG--CGUCCAaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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