miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29809 5' -52.7 NC_006273.1 + 93949 0.66 0.986548
Target:  5'- cGCgggaGGCGCGCCCugcgcauGCGCcGGUa- -3'
miRNA:   3'- cCGaa--UCGCGUGGGuu-----UGCGuCCAaa -5'
29809 5' -52.7 NC_006273.1 + 8674 0.66 0.986548
Target:  5'- aGGCgcUGGCGUuCCCGua-GCGGGUa- -3'
miRNA:   3'- -CCGa-AUCGCGuGGGUuugCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 213758 0.66 0.984843
Target:  5'- aGGCUgugGGUcucGuUGCCCAGcACGCAGGUg- -3'
miRNA:   3'- -CCGAa--UCG---C-GUGGGUU-UGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 25463 0.66 0.984843
Target:  5'- cGGCguuGCGgAUCC--ACGCGGGUUc -3'
miRNA:   3'- -CCGaauCGCgUGGGuuUGCGUCCAAa -5'
29809 5' -52.7 NC_006273.1 + 152530 0.66 0.984843
Target:  5'- uGGCUauGCGCacggcGCCCAGGCGCucGGc-- -3'
miRNA:   3'- -CCGAauCGCG-----UGGGUUUGCGu-CCaaa -5'
29809 5' -52.7 NC_006273.1 + 151480 0.66 0.984843
Target:  5'- gGGUccAGCGUGCCC-AGCGcCAGGa-- -3'
miRNA:   3'- -CCGaaUCGCGUGGGuUUGC-GUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 24725 0.66 0.984843
Target:  5'- cGGCcuccUGGCGCACauCCcGGCGCuAGGUg- -3'
miRNA:   3'- -CCGa---AUCGCGUG--GGuUUGCG-UCCAaa -5'
29809 5' -52.7 NC_006273.1 + 101854 0.67 0.982977
Target:  5'- aGGCUggcccagAGCGCguagcuguGCUCGGuGCGCAGGUc- -3'
miRNA:   3'- -CCGAa------UCGCG--------UGGGUU-UGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 29234 0.67 0.982977
Target:  5'- aGGCUcuGUGgACCCu-GCGCGGGa-- -3'
miRNA:   3'- -CCGAauCGCgUGGGuuUGCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 123095 0.67 0.980942
Target:  5'- cGGCU-GGCGC-CUCGGugcgguCGCAGGUc- -3'
miRNA:   3'- -CCGAaUCGCGuGGGUUu-----GCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 59097 0.67 0.980942
Target:  5'- aGCgagUAGCGCugCuCAcGCGCAcGGUa- -3'
miRNA:   3'- cCGa--AUCGCGugG-GUuUGCGU-CCAaa -5'
29809 5' -52.7 NC_006273.1 + 151786 0.67 0.980942
Target:  5'- cGGCgucgcGCGCGCCCAGGCuCAuGGa-- -3'
miRNA:   3'- -CCGaau--CGCGUGGGUUUGcGU-CCaaa -5'
29809 5' -52.7 NC_006273.1 + 216375 0.67 0.980942
Target:  5'- uGGUUgucuugcAGCGCGCCCGugGGCaGUAGGUc- -3'
miRNA:   3'- -CCGAa------UCGCGUGGGU--UUG-CGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 39579 0.67 0.978732
Target:  5'- uGCUgacgAGCGCGCa---GCGCGGGUa- -3'
miRNA:   3'- cCGAa---UCGCGUGgguuUGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 133027 0.67 0.978732
Target:  5'- aGGCUUuguGCGCGCCCAAcuggaucuGCGUAa---- -3'
miRNA:   3'- -CCGAAu--CGCGUGGGUU--------UGCGUccaaa -5'
29809 5' -52.7 NC_006273.1 + 93633 0.67 0.978732
Target:  5'- aGCUUcGCGCAUCCAcuGGCGCcGGc-- -3'
miRNA:   3'- cCGAAuCGCGUGGGU--UUGCGuCCaaa -5'
29809 5' -52.7 NC_006273.1 + 195812 0.67 0.978732
Target:  5'- cGCgcuGCGCGCUCGucaGCAGGUa- -3'
miRNA:   3'- cCGaauCGCGUGGGUuugCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 208809 0.67 0.976337
Target:  5'- gGGCgcugUGGCGCacagguugaGCCCG-GCGguGGUg- -3'
miRNA:   3'- -CCGa---AUCGCG---------UGGGUuUGCguCCAaa -5'
29809 5' -52.7 NC_006273.1 + 234067 0.67 0.97375
Target:  5'- uGGCUgcgcGGCGuCACCCGcGCGUAGa--- -3'
miRNA:   3'- -CCGAa---UCGC-GUGGGUuUGCGUCcaaa -5'
29809 5' -52.7 NC_006273.1 + 58648 0.67 0.97375
Target:  5'- --aUUAGCGCGUCCAAGCGCGcGUUg -3'
miRNA:   3'- ccgAAUCGCGUGGGUUUGCGUcCAAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.