miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29809 5' -52.7 NC_006273.1 + 1918 0.66 0.98938
Target:  5'- cGGCUggcUGGCGCugggcgcggugcuGCCCGcGCGguGGc-- -3'
miRNA:   3'- -CCGA---AUCGCG-------------UGGGUuUGCguCCaaa -5'
29809 5' -52.7 NC_006273.1 + 2031 0.69 0.945368
Target:  5'- cGGCggGGaCGCGCCgugcgCGAugGCAGGa-- -3'
miRNA:   3'- -CCGaaUC-GCGUGG-----GUUugCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 4996 0.66 0.990792
Target:  5'- uGGU--AGCuCugCCGAGCGCGGGc-- -3'
miRNA:   3'- -CCGaaUCGcGugGGUUUGCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 8674 0.66 0.986548
Target:  5'- aGGCgcUGGCGUuCCCGua-GCGGGUa- -3'
miRNA:   3'- -CCGa-AUCGCGuGGGUuugCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 14117 0.71 0.874434
Target:  5'- cGGCUguuucuGCGCACcgguCCGAACGCuAGGUc- -3'
miRNA:   3'- -CCGAau----CGCGUG----GGUUUGCG-UCCAaa -5'
29809 5' -52.7 NC_006273.1 + 24725 0.66 0.984843
Target:  5'- cGGCcuccUGGCGCACauCCcGGCGCuAGGUg- -3'
miRNA:   3'- -CCGa---AUCGCGUG--GGuUUGCG-UCCAaa -5'
29809 5' -52.7 NC_006273.1 + 25463 0.66 0.984843
Target:  5'- cGGCguuGCGgAUCC--ACGCGGGUUc -3'
miRNA:   3'- -CCGaauCGCgUGGGuuUGCGUCCAAa -5'
29809 5' -52.7 NC_006273.1 + 26374 0.69 0.940785
Target:  5'- cGCUUucAGCGUACUCAuuagcGCGCuGGUUUg -3'
miRNA:   3'- cCGAA--UCGCGUGGGUu----UGCGuCCAAA- -5'
29809 5' -52.7 NC_006273.1 + 27465 0.74 0.723845
Target:  5'- uGGCuUUGGCgGCACCUucucagaaaucgAAGCGCAGGUa- -3'
miRNA:   3'- -CCG-AAUCG-CGUGGG------------UUUGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 29234 0.67 0.982977
Target:  5'- aGGCUcuGUGgACCCu-GCGCGGGa-- -3'
miRNA:   3'- -CCGAauCGCgUGGGuuUGCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 33807 0.7 0.908184
Target:  5'- aGGUacaUGGCGUAgCCGcGACGCGGGUUg -3'
miRNA:   3'- -CCGa--AUCGCGUgGGU-UUGCGUCCAAa -5'
29809 5' -52.7 NC_006273.1 + 34298 0.71 0.895383
Target:  5'- aGGCacagGGUGCcguCCAGGCGCAGGUa- -3'
miRNA:   3'- -CCGaa--UCGCGug-GGUUUGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 37992 0.75 0.683355
Target:  5'- cGGCUc-GCGCGCCCAcagcgcggcGCGCGGGUg- -3'
miRNA:   3'- -CCGAauCGCGUGGGUu--------UGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 38125 0.68 0.957696
Target:  5'- aGCgccAGCGCGCCCAGcacgcccgcGCGCAGa--- -3'
miRNA:   3'- cCGaa-UCGCGUGGGUU---------UGCGUCcaaa -5'
29809 5' -52.7 NC_006273.1 + 39174 0.67 0.97375
Target:  5'- uGGCUgcgcGGCGuCACCCGcGCGUAGa--- -3'
miRNA:   3'- -CCGAa---UCGC-GUGGGUuUGCGUCcaaa -5'
29809 5' -52.7 NC_006273.1 + 39579 0.67 0.978732
Target:  5'- uGCUgacgAGCGCGCa---GCGCGGGUa- -3'
miRNA:   3'- cCGAa---UCGCGUGgguuUGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 41446 0.66 0.991944
Target:  5'- gGGUUUGG-GUACCCGcgAAgGUAGGUg- -3'
miRNA:   3'- -CCGAAUCgCGUGGGU--UUgCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 42418 0.7 0.922276
Target:  5'- cGGCgagcGCGCGCCCAAAaaggugugcgccgacUGCGGGa-- -3'
miRNA:   3'- -CCGaau-CGCGUGGGUUU---------------GCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 49255 0.72 0.835182
Target:  5'- uGGCccAGCGCGCCCAacAACuGguGGUa- -3'
miRNA:   3'- -CCGaaUCGCGUGGGU--UUG-CguCCAaa -5'
29809 5' -52.7 NC_006273.1 + 56217 0.66 0.991944
Target:  5'- aGGCUggcgcuGCGcCGCCUAAaguguccgauccGCGCGGGa-- -3'
miRNA:   3'- -CCGAau----CGC-GUGGGUU------------UGCGUCCaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.