miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29809 5' -52.7 NC_006273.1 + 58648 0.67 0.97375
Target:  5'- --aUUAGCGCGUCCAAGCGCGcGUUg -3'
miRNA:   3'- ccgAAUCGCGUGGGUUUGCGUcCAAa -5'
29809 5' -52.7 NC_006273.1 + 59097 0.67 0.980942
Target:  5'- aGCgagUAGCGCugCuCAcGCGCAcGGUa- -3'
miRNA:   3'- cCGa--AUCGCGugG-GUuUGCGU-CCAaa -5'
29809 5' -52.7 NC_006273.1 + 59866 0.66 0.991944
Target:  5'- uGGCUUugaaauaaAGCG-ACCCAAcaGCAGGUc- -3'
miRNA:   3'- -CCGAA--------UCGCgUGGGUUugCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 63764 0.66 0.990792
Target:  5'- uGGCcgGGCGCGCCUcu-CGgAGGa-- -3'
miRNA:   3'- -CCGaaUCGCGUGGGuuuGCgUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 76162 0.68 0.965097
Target:  5'- cGGCUaucgguucGCGCGCUCGucuuuucuucgauguGCGCAGGUUUc -3'
miRNA:   3'- -CCGAau------CGCGUGGGUu--------------UGCGUCCAAA- -5'
29809 5' -52.7 NC_006273.1 + 83411 0.66 0.990792
Target:  5'- cGGCccGGCgGCGCCCGA--GCGGGa-- -3'
miRNA:   3'- -CCGaaUCG-CGUGGGUUugCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 89382 0.68 0.967971
Target:  5'- cGCUUAGCcacCACCUGGACGgGGGg-- -3'
miRNA:   3'- cCGAAUCGc--GUGGGUUUGCgUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 89987 0.67 0.97375
Target:  5'- uGCUUGG-GCACCaCGGGCaaGCGGGUg- -3'
miRNA:   3'- cCGAAUCgCGUGG-GUUUG--CGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 90264 0.66 0.988103
Target:  5'- cGGCggcGGCGaauCGCCCGGGCugccccGCAGGUg- -3'
miRNA:   3'- -CCGaa-UCGC---GUGGGUUUG------CGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 93633 0.67 0.978732
Target:  5'- aGCUUcGCGCAUCCAcuGGCGCcGGc-- -3'
miRNA:   3'- cCGAAuCGCGUGGGU--UUGCGuCCaaa -5'
29809 5' -52.7 NC_006273.1 + 93949 0.66 0.986548
Target:  5'- cGCgggaGGCGCGCCCugcgcauGCGCcGGUa- -3'
miRNA:   3'- cCGaa--UCGCGUGGGuu-----UGCGuCCAaa -5'
29809 5' -52.7 NC_006273.1 + 94516 0.66 0.991944
Target:  5'- cGGCccgGGgGgACCCGAGCGgGGGc-- -3'
miRNA:   3'- -CCGaa-UCgCgUGGGUUUGCgUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 98444 0.69 0.945368
Target:  5'- cGGCgauGCGCGCCCGAuaagcguccaACGCccGGUa- -3'
miRNA:   3'- -CCGaauCGCGUGGGUU----------UGCGu-CCAaa -5'
29809 5' -52.7 NC_006273.1 + 101854 0.67 0.982977
Target:  5'- aGGCUggcccagAGCGCguagcuguGCUCGGuGCGCAGGUc- -3'
miRNA:   3'- -CCGAa------UCGCG--------UGGGUU-UGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 110825 0.66 0.986548
Target:  5'- uGGUUUgcGGUgGCAUCCAAACGUgAGGUa- -3'
miRNA:   3'- -CCGAA--UCG-CGUGGGUUUGCG-UCCAaa -5'
29809 5' -52.7 NC_006273.1 + 115923 0.69 0.944019
Target:  5'- cGCUgcacaaAGCGCgucagcaguccgccGCUCAAGCGCGGGUg- -3'
miRNA:   3'- cCGAa-----UCGCG--------------UGGGUUUGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 118277 0.68 0.964766
Target:  5'- aGCUgAGCGCGCUCAGGCcgGCGuGGUg- -3'
miRNA:   3'- cCGAaUCGCGUGGGUUUG--CGU-CCAaa -5'
29809 5' -52.7 NC_006273.1 + 123095 0.67 0.980942
Target:  5'- cGGCU-GGCGC-CUCGGugcgguCGCAGGUc- -3'
miRNA:   3'- -CCGAaUCGCGuGGGUUu-----GCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 127181 0.69 0.935464
Target:  5'- cGGCUcgucGGCauccaugGCGCCCAAACGC-GGUa- -3'
miRNA:   3'- -CCGAa---UCG-------CGUGGGUUUGCGuCCAaa -5'
29809 5' -52.7 NC_006273.1 + 131657 0.7 0.92558
Target:  5'- uGGCUUAcgacgcugacGCgGCGCCCgAAGCGCAGuGUa- -3'
miRNA:   3'- -CCGAAU----------CG-CGUGGG-UUUGCGUC-CAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.