miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29809 5' -52.7 NC_006273.1 + 132790 0.68 0.961343
Target:  5'- cGUUUuaCGCGCCguGGCGCAGGUg- -3'
miRNA:   3'- cCGAAucGCGUGGguUUGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 133027 0.67 0.978732
Target:  5'- aGGCUUuguGCGCGCCCAAcuggaucuGCGUAa---- -3'
miRNA:   3'- -CCGAAu--CGCGUGGGUU--------UGCGUccaaa -5'
29809 5' -52.7 NC_006273.1 + 135921 0.66 0.991944
Target:  5'- cGGUgguaauGCGCugCCAGACGCccgauuacgAGGa-- -3'
miRNA:   3'- -CCGaau---CGCGugGGUUUGCG---------UCCaaa -5'
29809 5' -52.7 NC_006273.1 + 137217 0.7 0.901902
Target:  5'- aGCgcgAGCGCucggcGCCCAAAcCGCAGGa-- -3'
miRNA:   3'- cCGaa-UCGCG-----UGGGUUU-GCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 138469 1.07 0.010185
Target:  5'- gGGCUUAGCGCACCCAAACGCAGGUUUc -3'
miRNA:   3'- -CCGAAUCGCGUGGGUUUGCGUCCAAA- -5'
29809 5' -52.7 NC_006273.1 + 141443 0.69 0.940785
Target:  5'- cGCagGGCGCGCCUcc-CGCGGGUc- -3'
miRNA:   3'- cCGaaUCGCGUGGGuuuGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 143179 0.74 0.753401
Target:  5'- aGGUUUGGCGC-CCguAggcGCGCGGGUUUu -3'
miRNA:   3'- -CCGAAUCGCGuGGguU---UGCGUCCAAA- -5'
29809 5' -52.7 NC_006273.1 + 147535 0.66 0.986548
Target:  5'- aGGCgaugggGGCGCGCCgauGACGaCAGGc-- -3'
miRNA:   3'- -CCGaa----UCGCGUGGgu-UUGC-GUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 148023 0.66 0.991944
Target:  5'- uGGC---GCGCACCUucACGCcGGUg- -3'
miRNA:   3'- -CCGaauCGCGUGGGuuUGCGuCCAaa -5'
29809 5' -52.7 NC_006273.1 + 148739 0.71 0.866247
Target:  5'- cGCUcGGCGUGCCCGaggaugaGugGCAGGUc- -3'
miRNA:   3'- cCGAaUCGCGUGGGU-------UugCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 151480 0.66 0.984843
Target:  5'- gGGUccAGCGUGCCC-AGCGcCAGGa-- -3'
miRNA:   3'- -CCGaaUCGCGUGGGuUUGC-GUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 151786 0.67 0.980942
Target:  5'- cGGCgucgcGCGCGCCCAGGCuCAuGGa-- -3'
miRNA:   3'- -CCGaau--CGCGUGGGUUUGcGU-CCaaa -5'
29809 5' -52.7 NC_006273.1 + 152530 0.66 0.984843
Target:  5'- uGGCUauGCGCacggcGCCCAGGCGCucGGc-- -3'
miRNA:   3'- -CCGAauCGCG-----UGGGUUUGCGu-CCaaa -5'
29809 5' -52.7 NC_006273.1 + 152775 0.74 0.763047
Target:  5'- cGCggAGCGCGCCCAGcACGCccGUUUg -3'
miRNA:   3'- cCGaaUCGCGUGGGUU-UGCGucCAAA- -5'
29809 5' -52.7 NC_006273.1 + 153628 0.69 0.940785
Target:  5'- cGGCgucAGCGUucgcaGCCCGGcuccGCGCAGGg-- -3'
miRNA:   3'- -CCGaa-UCGCG-----UGGGUU----UGCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 160138 0.66 0.991944
Target:  5'- cGGCggccAGCGCuucgUCCAuagguacuuGACGCGGGUg- -3'
miRNA:   3'- -CCGaa--UCGCGu---GGGU---------UUGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 163035 0.66 0.991944
Target:  5'- ----cAGCaGCGCCCAcAGCGCGGGc-- -3'
miRNA:   3'- ccgaaUCG-CGUGGGU-UUGCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 167400 0.68 0.970088
Target:  5'- gGGCagAGCGuCGCCCAGACagacuuccacagugGCGGGc-- -3'
miRNA:   3'- -CCGaaUCGC-GUGGGUUUG--------------CGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 176144 0.66 0.989515
Target:  5'- cGCUgccAGCgGCGCCCA---GCAGGUa- -3'
miRNA:   3'- cCGAa--UCG-CGUGGGUuugCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 177261 0.66 0.989515
Target:  5'- cGCUgcGCGUGCCCGuggugaauuACGCGuGGUUg -3'
miRNA:   3'- cCGAauCGCGUGGGUu--------UGCGU-CCAAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.