miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29809 5' -52.7 NC_006273.1 + 234067 0.67 0.97375
Target:  5'- uGGCUgcgcGGCGuCACCCGcGCGUAGa--- -3'
miRNA:   3'- -CCGAa---UCGC-GUGGGUuUGCGUCcaaa -5'
29809 5' -52.7 NC_006273.1 + 233568 0.68 0.970382
Target:  5'- cGCgUUGGCGCGCCaacaguaagguGACGaCAGGUUg -3'
miRNA:   3'- cCG-AAUCGCGUGGgu---------UUGC-GUCCAAa -5'
29809 5' -52.7 NC_006273.1 + 233018 0.68 0.957696
Target:  5'- aGCgccAGCGCGCCCAGcacgcccgcGCGCAGa--- -3'
miRNA:   3'- cCGaa-UCGCGUGGGUU---------UGCGUCcaaa -5'
29809 5' -52.7 NC_006273.1 + 232885 0.75 0.683355
Target:  5'- cGGCUc-GCGCGCCCAcagcgcggcGCGCGGGUg- -3'
miRNA:   3'- -CCGAauCGCGUGGGUu--------UGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 219262 0.69 0.944921
Target:  5'- cGGCaUGGUGCugCCGGGCcgcaccuGCAGGa-- -3'
miRNA:   3'- -CCGaAUCGCGugGGUUUG-------CGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 216375 0.67 0.980942
Target:  5'- uGGUUgucuugcAGCGCGCCCGugGGCaGUAGGUc- -3'
miRNA:   3'- -CCGAa------UCGCGUGGGU--UUG-CGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 213758 0.66 0.984843
Target:  5'- aGGCUgugGGUcucGuUGCCCAGcACGCAGGUg- -3'
miRNA:   3'- -CCGAa--UCG---C-GUGGGUU-UGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 212426 0.67 0.97375
Target:  5'- cGGCguacuGCuGCACCCAGACGUGGc--- -3'
miRNA:   3'- -CCGaau--CG-CGUGGGUUUGCGUCcaaa -5'
29809 5' -52.7 NC_006273.1 + 208809 0.67 0.976337
Target:  5'- gGGCgcugUGGCGCacagguugaGCCCG-GCGguGGUg- -3'
miRNA:   3'- -CCGa---AUCGCG---------UGGGUuUGCguCCAaa -5'
29809 5' -52.7 NC_006273.1 + 207819 0.68 0.970963
Target:  5'- cGCUUAGCGCGaaaacugucCCCAAccaugacaGCGCcGGUg- -3'
miRNA:   3'- cCGAAUCGCGU---------GGGUU--------UGCGuCCAaa -5'
29809 5' -52.7 NC_006273.1 + 206920 0.68 0.964766
Target:  5'- aGGCUaGGCccGUACaCCAGACGCAGa--- -3'
miRNA:   3'- -CCGAaUCG--CGUG-GGUUUGCGUCcaaa -5'
29809 5' -52.7 NC_006273.1 + 202685 0.66 0.991944
Target:  5'- cGUggAGCGCGCU---GCGCAGGg-- -3'
miRNA:   3'- cCGaaUCGCGUGGguuUGCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 196924 0.69 0.945368
Target:  5'- cGGCggGGaCGCGCCgugcgCGAugGCAGGa-- -3'
miRNA:   3'- -CCGaaUC-GCGUGG-----GUUugCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 196810 0.66 0.98938
Target:  5'- cGGCUggcUGGCGCugggcgcggugcuGCCCGcGCGguGGc-- -3'
miRNA:   3'- -CCGA---AUCGCG-------------UGGGUuUGCguCCaaa -5'
29809 5' -52.7 NC_006273.1 + 195812 0.67 0.978732
Target:  5'- cGCgcuGCGCGCUCGucaGCAGGUa- -3'
miRNA:   3'- cCGaauCGCGUGGGUuugCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 188981 0.68 0.964766
Target:  5'- gGGC--GGCGUGCUCAGguucuuacgcgGCGCGGGUa- -3'
miRNA:   3'- -CCGaaUCGCGUGGGUU-----------UGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 186262 0.66 0.990792
Target:  5'- cGGUUUAGCcugcguCACCgAGGCGgAGGUg- -3'
miRNA:   3'- -CCGAAUCGc-----GUGGgUUUGCgUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 180165 0.73 0.791238
Target:  5'- cGCUUAGUGUGCCCAGAgcuacCGCAcGGUa- -3'
miRNA:   3'- cCGAAUCGCGUGGGUUU-----GCGU-CCAaa -5'
29809 5' -52.7 NC_006273.1 + 177261 0.66 0.989515
Target:  5'- cGCUgcGCGUGCCCGuggugaauuACGCGuGGUUg -3'
miRNA:   3'- cCGAauCGCGUGGGUu--------UGCGU-CCAAa -5'
29809 5' -52.7 NC_006273.1 + 176144 0.66 0.989515
Target:  5'- cGCUgccAGCgGCGCCCA---GCAGGUa- -3'
miRNA:   3'- cCGAa--UCG-CGUGGGUuugCGUCCAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.