Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29809 | 5' | -52.7 | NC_006273.1 | + | 167400 | 0.68 | 0.970088 |
Target: 5'- gGGCagAGCGuCGCCCAGACagacuuccacagugGCGGGc-- -3' miRNA: 3'- -CCGaaUCGC-GUGGGUUUG--------------CGUCCaaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 163035 | 0.66 | 0.991944 |
Target: 5'- ----cAGCaGCGCCCAcAGCGCGGGc-- -3' miRNA: 3'- ccgaaUCG-CGUGGGU-UUGCGUCCaaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 160138 | 0.66 | 0.991944 |
Target: 5'- cGGCggccAGCGCuucgUCCAuagguacuuGACGCGGGUg- -3' miRNA: 3'- -CCGaa--UCGCGu---GGGU---------UUGCGUCCAaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 153628 | 0.69 | 0.940785 |
Target: 5'- cGGCgucAGCGUucgcaGCCCGGcuccGCGCAGGg-- -3' miRNA: 3'- -CCGaa-UCGCG-----UGGGUU----UGCGUCCaaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 152775 | 0.74 | 0.763047 |
Target: 5'- cGCggAGCGCGCCCAGcACGCccGUUUg -3' miRNA: 3'- cCGaaUCGCGUGGGUU-UGCGucCAAA- -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 152530 | 0.66 | 0.984843 |
Target: 5'- uGGCUauGCGCacggcGCCCAGGCGCucGGc-- -3' miRNA: 3'- -CCGAauCGCG-----UGGGUUUGCGu-CCaaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 151786 | 0.67 | 0.980942 |
Target: 5'- cGGCgucgcGCGCGCCCAGGCuCAuGGa-- -3' miRNA: 3'- -CCGaau--CGCGUGGGUUUGcGU-CCaaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 151480 | 0.66 | 0.984843 |
Target: 5'- gGGUccAGCGUGCCC-AGCGcCAGGa-- -3' miRNA: 3'- -CCGaaUCGCGUGGGuUUGC-GUCCaaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 148739 | 0.71 | 0.866247 |
Target: 5'- cGCUcGGCGUGCCCGaggaugaGugGCAGGUc- -3' miRNA: 3'- cCGAaUCGCGUGGGU-------UugCGUCCAaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 148023 | 0.66 | 0.991944 |
Target: 5'- uGGC---GCGCACCUucACGCcGGUg- -3' miRNA: 3'- -CCGaauCGCGUGGGuuUGCGuCCAaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 147535 | 0.66 | 0.986548 |
Target: 5'- aGGCgaugggGGCGCGCCgauGACGaCAGGc-- -3' miRNA: 3'- -CCGaa----UCGCGUGGgu-UUGC-GUCCaaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 143179 | 0.74 | 0.753401 |
Target: 5'- aGGUUUGGCGC-CCguAggcGCGCGGGUUUu -3' miRNA: 3'- -CCGAAUCGCGuGGguU---UGCGUCCAAA- -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 141443 | 0.69 | 0.940785 |
Target: 5'- cGCagGGCGCGCCUcc-CGCGGGUc- -3' miRNA: 3'- cCGaaUCGCGUGGGuuuGCGUCCAaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 138469 | 1.07 | 0.010185 |
Target: 5'- gGGCUUAGCGCACCCAAACGCAGGUUUc -3' miRNA: 3'- -CCGAAUCGCGUGGGUUUGCGUCCAAA- -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 137217 | 0.7 | 0.901902 |
Target: 5'- aGCgcgAGCGCucggcGCCCAAAcCGCAGGa-- -3' miRNA: 3'- cCGaa-UCGCG-----UGGGUUU-GCGUCCaaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 135921 | 0.66 | 0.991944 |
Target: 5'- cGGUgguaauGCGCugCCAGACGCccgauuacgAGGa-- -3' miRNA: 3'- -CCGaau---CGCGugGGUUUGCG---------UCCaaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 133027 | 0.67 | 0.978732 |
Target: 5'- aGGCUUuguGCGCGCCCAAcuggaucuGCGUAa---- -3' miRNA: 3'- -CCGAAu--CGCGUGGGUU--------UGCGUccaaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 132790 | 0.68 | 0.961343 |
Target: 5'- cGUUUuaCGCGCCguGGCGCAGGUg- -3' miRNA: 3'- cCGAAucGCGUGGguUUGCGUCCAaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 131657 | 0.7 | 0.92558 |
Target: 5'- uGGCUUAcgacgcugacGCgGCGCCCgAAGCGCAGuGUa- -3' miRNA: 3'- -CCGAAU----------CG-CGUGGG-UUUGCGUC-CAaa -5' |
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29809 | 5' | -52.7 | NC_006273.1 | + | 127181 | 0.69 | 0.935464 |
Target: 5'- cGGCUcgucGGCauccaugGCGCCCAAACGC-GGUa- -3' miRNA: 3'- -CCGAa---UCG-------CGUGGGUUUGCGuCCAaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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