miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29809 5' -52.7 NC_006273.1 + 89987 0.67 0.97375
Target:  5'- uGCUUGG-GCACCaCGGGCaaGCGGGUg- -3'
miRNA:   3'- cCGAAUCgCGUGG-GUUUG--CGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 219262 0.69 0.944921
Target:  5'- cGGCaUGGUGCugCCGGGCcgcaccuGCAGGa-- -3'
miRNA:   3'- -CCGaAUCGCGugGGUUUG-------CGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 196924 0.69 0.945368
Target:  5'- cGGCggGGaCGCGCCgugcgCGAugGCAGGa-- -3'
miRNA:   3'- -CCGaaUC-GCGUGG-----GUUugCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 233018 0.68 0.957696
Target:  5'- aGCgccAGCGCGCCCAGcacgcccgcGCGCAGa--- -3'
miRNA:   3'- cCGaa-UCGCGUGGGUU---------UGCGUCcaaa -5'
29809 5' -52.7 NC_006273.1 + 118277 0.68 0.964766
Target:  5'- aGCUgAGCGCGCUCAGGCcgGCGuGGUg- -3'
miRNA:   3'- cCGAaUCGCGUGGGUUUG--CGU-CCAaa -5'
29809 5' -52.7 NC_006273.1 + 206920 0.68 0.964766
Target:  5'- aGGCUaGGCccGUACaCCAGACGCAGa--- -3'
miRNA:   3'- -CCGAaUCG--CGUG-GGUUUGCGUCcaaa -5'
29809 5' -52.7 NC_006273.1 + 188981 0.68 0.964766
Target:  5'- gGGC--GGCGUGCUCAGguucuuacgcgGCGCGGGUa- -3'
miRNA:   3'- -CCGaaUCGCGUGGGUU-----------UGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 167400 0.68 0.970088
Target:  5'- gGGCagAGCGuCGCCCAGACagacuuccacagugGCGGGc-- -3'
miRNA:   3'- -CCGaaUCGC-GUGGGUUUG--------------CGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 207819 0.68 0.970963
Target:  5'- cGCUUAGCGCGaaaacugucCCCAAccaugacaGCGCcGGUg- -3'
miRNA:   3'- cCGAAUCGCGU---------GGGUU--------UGCGuCCAaa -5'
29809 5' -52.7 NC_006273.1 + 115923 0.69 0.944019
Target:  5'- cGCUgcacaaAGCGCgucagcaguccgccGCUCAAGCGCGGGUg- -3'
miRNA:   3'- cCGAa-----UCGCG--------------UGGGUUUGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 127181 0.69 0.935464
Target:  5'- cGGCUcgucGGCauccaugGCGCCCAAACGC-GGUa- -3'
miRNA:   3'- -CCGAa---UCG-------CGUGGGUUUGCGuCCAaa -5'
29809 5' -52.7 NC_006273.1 + 42418 0.7 0.922276
Target:  5'- cGGCgagcGCGCGCCCAAAaaggugugcgccgacUGCGGGa-- -3'
miRNA:   3'- -CCGaau-CGCGUGGGUUU---------------GCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 27465 0.74 0.723845
Target:  5'- uGGCuUUGGCgGCACCUucucagaaaucgAAGCGCAGGUa- -3'
miRNA:   3'- -CCG-AAUCG-CGUGGG------------UUUGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 152775 0.74 0.763047
Target:  5'- cGCggAGCGCGCCCAGcACGCccGUUUg -3'
miRNA:   3'- cCGaaUCGCGUGGGUU-UGCGucCAAA- -5'
29809 5' -52.7 NC_006273.1 + 180165 0.73 0.791238
Target:  5'- cGCUUAGUGUGCCCAGAgcuacCGCAcGGUa- -3'
miRNA:   3'- cCGAAUCGCGUGGGUUU-----GCGU-CCAaa -5'
29809 5' -52.7 NC_006273.1 + 49255 0.72 0.835182
Target:  5'- uGGCccAGCGCGCCCAacAACuGguGGUa- -3'
miRNA:   3'- -CCGaaUCGCGUGGGU--UUG-CguCCAaa -5'
29809 5' -52.7 NC_006273.1 + 148739 0.71 0.866247
Target:  5'- cGCUcGGCGUGCCCGaggaugaGugGCAGGUc- -3'
miRNA:   3'- cCGAaUCGCGUGGGU-------UugCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 34298 0.71 0.895383
Target:  5'- aGGCacagGGUGCcguCCAGGCGCAGGUa- -3'
miRNA:   3'- -CCGaa--UCGCGug-GGUUUGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 137217 0.7 0.901902
Target:  5'- aGCgcgAGCGCucggcGCCCAAAcCGCAGGa-- -3'
miRNA:   3'- cCGaa-UCGCG-----UGGGUUU-GCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 33807 0.7 0.908184
Target:  5'- aGGUacaUGGCGUAgCCGcGACGCGGGUUg -3'
miRNA:   3'- -CCGa--AUCGCGUgGGU-UUGCGUCCAAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.