miRNA display CGI


Results 1 - 20 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29809 5' -52.7 NC_006273.1 + 138469 1.07 0.010185
Target:  5'- gGGCUUAGCGCACCCAAACGCAGGUUUc -3'
miRNA:   3'- -CCGAAUCGCGUGGGUUUGCGUCCAAA- -5'
29809 5' -52.7 NC_006273.1 + 133027 0.67 0.978732
Target:  5'- aGGCUUuguGCGCGCCCAAcuggaucuGCGUAa---- -3'
miRNA:   3'- -CCGAAu--CGCGUGGGUU--------UGCGUccaaa -5'
29809 5' -52.7 NC_006273.1 + 29234 0.67 0.982977
Target:  5'- aGGCUcuGUGgACCCu-GCGCGGGa-- -3'
miRNA:   3'- -CCGAauCGCgUGGGuuUGCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 135921 0.66 0.991944
Target:  5'- cGGUgguaauGCGCugCCAGACGCccgauuacgAGGa-- -3'
miRNA:   3'- -CCGaau---CGCGugGGUUUGCG---------UCCaaa -5'
29809 5' -52.7 NC_006273.1 + 131657 0.7 0.92558
Target:  5'- uGGCUUAcgacgcugacGCgGCGCCCgAAGCGCAGuGUa- -3'
miRNA:   3'- -CCGAAU----------CG-CGUGGG-UUUGCGUC-CAaa -5'
29809 5' -52.7 NC_006273.1 + 153628 0.69 0.940785
Target:  5'- cGGCgucAGCGUucgcaGCCCGGcuccGCGCAGGg-- -3'
miRNA:   3'- -CCGaa-UCGCG-----UGGGUU----UGCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 141443 0.69 0.940785
Target:  5'- cGCagGGCGCGCCUcc-CGCGGGUc- -3'
miRNA:   3'- cCGaaUCGCGUGGGuuuGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 98444 0.69 0.945368
Target:  5'- cGGCgauGCGCGCCCGAuaagcguccaACGCccGGUa- -3'
miRNA:   3'- -CCGaauCGCGUGGGUU----------UGCGu-CCAaa -5'
29809 5' -52.7 NC_006273.1 + 132790 0.68 0.961343
Target:  5'- cGUUUuaCGCGCCguGGCGCAGGUg- -3'
miRNA:   3'- cCGAAucGCGUGGguUUGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 93633 0.67 0.978732
Target:  5'- aGCUUcGCGCAUCCAcuGGCGCcGGc-- -3'
miRNA:   3'- cCGAAuCGCGUGGGU--UUGCGuCCaaa -5'
29809 5' -52.7 NC_006273.1 + 89382 0.68 0.967971
Target:  5'- cGCUUAGCcacCACCUGGACGgGGGg-- -3'
miRNA:   3'- cCGAAUCGc--GUGGGUUUGCgUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 38125 0.68 0.957696
Target:  5'- aGCgccAGCGCGCCCAGcacgcccgcGCGCAGa--- -3'
miRNA:   3'- cCGaa-UCGCGUGGGUU---------UGCGUCcaaa -5'
29809 5' -52.7 NC_006273.1 + 37992 0.75 0.683355
Target:  5'- cGGCUc-GCGCGCCCAcagcgcggcGCGCGGGUg- -3'
miRNA:   3'- -CCGAauCGCGUGGGUu--------UGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 233568 0.68 0.970382
Target:  5'- cGCgUUGGCGCGCCaacaguaagguGACGaCAGGUUg -3'
miRNA:   3'- cCG-AAUCGCGUGGgu---------UUGC-GUCCAAa -5'
29809 5' -52.7 NC_006273.1 + 143179 0.74 0.753401
Target:  5'- aGGUUUGGCGC-CCguAggcGCGCGGGUUUu -3'
miRNA:   3'- -CCGAAUCGCGuGGguU---UGCGUCCAAA- -5'
29809 5' -52.7 NC_006273.1 + 2031 0.69 0.945368
Target:  5'- cGGCggGGaCGCGCCgugcgCGAugGCAGGa-- -3'
miRNA:   3'- -CCGaaUC-GCGUGG-----GUUugCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 39174 0.67 0.97375
Target:  5'- uGGCUgcgcGGCGuCACCCGcGCGUAGa--- -3'
miRNA:   3'- -CCGAa---UCGC-GUGGGUuUGCGUCcaaa -5'
29809 5' -52.7 NC_006273.1 + 195812 0.67 0.978732
Target:  5'- cGCgcuGCGCGCUCGucaGCAGGUa- -3'
miRNA:   3'- cCGaauCGCGUGGGUuugCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 14117 0.71 0.874434
Target:  5'- cGGCUguuucuGCGCACcgguCCGAACGCuAGGUc- -3'
miRNA:   3'- -CCGAau----CGCGUG----GGUUUGCG-UCCAaa -5'
29809 5' -52.7 NC_006273.1 + 26374 0.69 0.940785
Target:  5'- cGCUUucAGCGUACUCAuuagcGCGCuGGUUUg -3'
miRNA:   3'- cCGAA--UCGCGUGGGUu----UGCGuCCAAA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.