miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29809 5' -52.7 NC_006273.1 + 160138 0.66 0.991944
Target:  5'- cGGCggccAGCGCuucgUCCAuagguacuuGACGCGGGUg- -3'
miRNA:   3'- -CCGaa--UCGCGu---GGGU---------UUGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 133027 0.67 0.978732
Target:  5'- aGGCUUuguGCGCGCCCAAcuggaucuGCGUAa---- -3'
miRNA:   3'- -CCGAAu--CGCGUGGGUU--------UGCGUccaaa -5'
29809 5' -52.7 NC_006273.1 + 143179 0.74 0.753401
Target:  5'- aGGUUUGGCGC-CCguAggcGCGCGGGUUUu -3'
miRNA:   3'- -CCGAAUCGCGuGGguU---UGCGUCCAAA- -5'
29809 5' -52.7 NC_006273.1 + 90264 0.66 0.988103
Target:  5'- cGGCggcGGCGaauCGCCCGGGCugccccGCAGGUg- -3'
miRNA:   3'- -CCGaa-UCGC---GUGGGUUUG------CGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 202685 0.66 0.991944
Target:  5'- cGUggAGCGCGCU---GCGCAGGg-- -3'
miRNA:   3'- cCGaaUCGCGUGGguuUGCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 83411 0.66 0.990792
Target:  5'- cGGCccGGCgGCGCCCGA--GCGGGa-- -3'
miRNA:   3'- -CCGaaUCG-CGUGGGUUugCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 37992 0.75 0.683355
Target:  5'- cGGCUc-GCGCGCCCAcagcgcggcGCGCGGGUg- -3'
miRNA:   3'- -CCGAauCGCGUGGGUu--------UGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 138469 1.07 0.010185
Target:  5'- gGGCUUAGCGCACCCAAACGCAGGUUUc -3'
miRNA:   3'- -CCGAAUCGCGUGGGUUUGCGUCCAAA- -5'
29809 5' -52.7 NC_006273.1 + 131657 0.7 0.92558
Target:  5'- uGGCUUAcgacgcugacGCgGCGCCCgAAGCGCAGuGUa- -3'
miRNA:   3'- -CCGAAU----------CG-CGUGGG-UUUGCGUC-CAaa -5'
29809 5' -52.7 NC_006273.1 + 195812 0.67 0.978732
Target:  5'- cGCgcuGCGCGCUCGucaGCAGGUa- -3'
miRNA:   3'- cCGaauCGCGUGGGUuugCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 34298 0.71 0.895383
Target:  5'- aGGCacagGGUGCcguCCAGGCGCAGGUa- -3'
miRNA:   3'- -CCGaa--UCGCGug-GGUUUGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 216375 0.67 0.980942
Target:  5'- uGGUUgucuugcAGCGCGCCCGugGGCaGUAGGUc- -3'
miRNA:   3'- -CCGAa------UCGCGUGGGU--UUG-CGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 233018 0.68 0.957696
Target:  5'- aGCgccAGCGCGCCCAGcacgcccgcGCGCAGa--- -3'
miRNA:   3'- cCGaa-UCGCGUGGGUU---------UGCGUCcaaa -5'
29809 5' -52.7 NC_006273.1 + 196924 0.69 0.945368
Target:  5'- cGGCggGGaCGCGCCgugcgCGAugGCAGGa-- -3'
miRNA:   3'- -CCGaaUC-GCGUGG-----GUUugCGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 219262 0.69 0.944921
Target:  5'- cGGCaUGGUGCugCCGGGCcgcaccuGCAGGa-- -3'
miRNA:   3'- -CCGaAUCGCGugGGUUUG-------CGUCCaaa -5'
29809 5' -52.7 NC_006273.1 + 208809 0.67 0.976337
Target:  5'- gGGCgcugUGGCGCacagguugaGCCCG-GCGguGGUg- -3'
miRNA:   3'- -CCGa---AUCGCG---------UGGGUuUGCguCCAaa -5'
29809 5' -52.7 NC_006273.1 + 39579 0.67 0.978732
Target:  5'- uGCUgacgAGCGCGCa---GCGCGGGUa- -3'
miRNA:   3'- cCGAa---UCGCGUGgguuUGCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 59097 0.67 0.980942
Target:  5'- aGCgagUAGCGCugCuCAcGCGCAcGGUa- -3'
miRNA:   3'- cCGa--AUCGCGugG-GUuUGCGU-CCAaa -5'
29809 5' -52.7 NC_006273.1 + 123095 0.67 0.980942
Target:  5'- cGGCU-GGCGC-CUCGGugcgguCGCAGGUc- -3'
miRNA:   3'- -CCGAaUCGCGuGGGUUu-----GCGUCCAaa -5'
29809 5' -52.7 NC_006273.1 + 151786 0.67 0.980942
Target:  5'- cGGCgucgcGCGCGCCCAGGCuCAuGGa-- -3'
miRNA:   3'- -CCGaau--CGCGUGGGUUUGcGU-CCaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.