Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2981 | 5' | -52.3 | NC_001493.1 | + | 42014 | 0.68 | 0.942236 |
Target: 5'- uCUCcGCGGGUGAucaacugcuguGCCCGagugCGAUCa -3' miRNA: 3'- -GAGaCGCUCACU-----------UGGGCaguaGCUAG- -5' |
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2981 | 5' | -52.3 | NC_001493.1 | + | 8427 | 0.66 | 0.972319 |
Target: 5'- -gCUGCGGcuGUGGACCCGggcaccccccCGUCGAc- -3' miRNA: 3'- gaGACGCU--CACUUGGGCa---------GUAGCUag -5' |
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2981 | 5' | -52.3 | NC_001493.1 | + | 123981 | 0.66 | 0.972319 |
Target: 5'- -gCUGCGGcuGUGGACCCGggcaccccccCGUCGAc- -3' miRNA: 3'- gaGACGCU--CACUUGGGCa---------GUAGCUag -5' |
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2981 | 5' | -52.3 | NC_001493.1 | + | 99687 | 1.09 | 0.005788 |
Target: 5'- gCUCUGCGAGUGAACCCGUCAUCGAUCc -3' miRNA: 3'- -GAGACGCUCACUUGGGCAGUAGCUAG- -5' |
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2981 | 5' | -52.3 | NC_001493.1 | + | 73081 | 0.69 | 0.921311 |
Target: 5'- aCUCgUGCGGGcgGGcACCCGUgAUCGAc- -3' miRNA: 3'- -GAG-ACGCUCa-CU-UGGGCAgUAGCUag -5' |
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2981 | 5' | -52.3 | NC_001493.1 | + | 66219 | 0.67 | 0.955295 |
Target: 5'- gCUUUgGCGGGUGGaagcucuacgacGCCCGUCuauugagucgcUCGAUCg -3' miRNA: 3'- -GAGA-CGCUCACU------------UGGGCAGu----------AGCUAG- -5' |
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2981 | 5' | -52.3 | NC_001493.1 | + | 113149 | 0.66 | 0.977603 |
Target: 5'- uCUCUGCG-GUGAucccagaggcauACCCGUUauucguauacgaAUCGAa- -3' miRNA: 3'- -GAGACGCuCACU------------UGGGCAG------------UAGCUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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