miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 3' -55.3 NC_006273.1 + 94638 0.66 0.985602
Target:  5'- cGGACGggac-CCGggGUCCG-CGCCCu -3'
miRNA:   3'- -CCUGCagaacGGCagCAGGCaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 34601 0.66 0.985602
Target:  5'- cGGAUGUCguacUUGCCGUgCG-CCGUaGCgCa -3'
miRNA:   3'- -CCUGCAG----AACGGCA-GCaGGCAgUGgG- -5'
29810 3' -55.3 NC_006273.1 + 112421 0.66 0.985439
Target:  5'- cGGACG-CUgcuacaaccaccgUGUCGUccgCGUUCGUCGuCCCc -3'
miRNA:   3'- -CCUGCaGA-------------ACGGCA---GCAGGCAGU-GGG- -5'
29810 3' -55.3 NC_006273.1 + 177568 0.66 0.985439
Target:  5'- cGGGCGUCUUcgcagcguucccgGUCGUCGUgUGU-GCUCu -3'
miRNA:   3'- -CCUGCAGAA-------------CGGCAGCAgGCAgUGGG- -5'
29810 3' -55.3 NC_006273.1 + 157150 0.66 0.983911
Target:  5'- aGGcUGUaaccaacgUGCUGUCGcCCGUCuuuCCCg -3'
miRNA:   3'- -CCuGCAga------ACGGCAGCaGGCAGu--GGG- -5'
29810 3' -55.3 NC_006273.1 + 175666 0.66 0.983911
Target:  5'- cGGCGauaugGCCucauaUCGUCUGUCACCUa -3'
miRNA:   3'- cCUGCagaa-CGGc----AGCAGGCAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 78424 0.66 0.983911
Target:  5'- cGcCGUCagcGUCGUCGUCCGU-GCCa -3'
miRNA:   3'- cCuGCAGaa-CGGCAGCAGGCAgUGGg -5'
29810 3' -55.3 NC_006273.1 + 121023 0.66 0.983911
Target:  5'- aGACGUC--GUCGUCGcCCuGggcggCACCCu -3'
miRNA:   3'- cCUGCAGaaCGGCAGCaGG-Ca----GUGGG- -5'
29810 3' -55.3 NC_006273.1 + 109513 0.66 0.983734
Target:  5'- cGGGCGUgccuccugcaugCUgGCCGUCGaUCCGUacgacacggaggcCGCCa -3'
miRNA:   3'- -CCUGCA------------GAaCGGCAGC-AGGCA-------------GUGGg -5'
29810 3' -55.3 NC_006273.1 + 102629 0.66 0.982826
Target:  5'- cGGcACGUCguacagcucgucccUGCUGUCGUC-GUCucCCCg -3'
miRNA:   3'- -CC-UGCAGa-------------ACGGCAGCAGgCAGu-GGG- -5'
29810 3' -55.3 NC_006273.1 + 233416 0.66 0.982073
Target:  5'- cGACGUCguccCCGUCG-CCGgC-CCCg -3'
miRNA:   3'- cCUGCAGaac-GGCAGCaGGCaGuGGG- -5'
29810 3' -55.3 NC_006273.1 + 32646 0.66 0.982073
Target:  5'- cGGAUGacCUgGCCGUCGgcgUCgCGUCgcagGCCCg -3'
miRNA:   3'- -CCUGCa-GAaCGGCAGC---AG-GCAG----UGGG- -5'
29810 3' -55.3 NC_006273.1 + 171614 0.66 0.982073
Target:  5'- --cCGUCacGCCGUCcUCCGagaggcgCGCCCg -3'
miRNA:   3'- ccuGCAGaaCGGCAGcAGGCa------GUGGG- -5'
29810 3' -55.3 NC_006273.1 + 226309 0.66 0.982073
Target:  5'- aGACGUCgucGUccucguccucuuCGUCGUCUGU-GCCCg -3'
miRNA:   3'- cCUGCAGaa-CG------------GCAGCAGGCAgUGGG- -5'
29810 3' -55.3 NC_006273.1 + 38523 0.66 0.982073
Target:  5'- cGACGUCguccCCGUCG-CCGgC-CCCg -3'
miRNA:   3'- cCUGCAGaac-GGCAGCaGGCaGuGGG- -5'
29810 3' -55.3 NC_006273.1 + 133728 0.66 0.981687
Target:  5'- uGGCGUUggccgaguagcgUGCCGUCGUgCCuUCGgCCa -3'
miRNA:   3'- cCUGCAGa-----------ACGGCAGCA-GGcAGUgGG- -5'
29810 3' -55.3 NC_006273.1 + 123353 0.66 0.980082
Target:  5'- uGGGCGUCagauCCG-CGUCCGUUgauUCCg -3'
miRNA:   3'- -CCUGCAGaac-GGCaGCAGGCAGu--GGG- -5'
29810 3' -55.3 NC_006273.1 + 133574 0.66 0.980082
Target:  5'- cGAuCGUCUcguuucugccgaUGCCGgCGUCaGUCGCCg -3'
miRNA:   3'- cCU-GCAGA------------ACGGCaGCAGgCAGUGGg -5'
29810 3' -55.3 NC_006273.1 + 81947 0.66 0.980082
Target:  5'- uGGAaGUCUUGCCGgCGcCCGccgUGCCg -3'
miRNA:   3'- -CCUgCAGAACGGCaGCaGGCa--GUGGg -5'
29810 3' -55.3 NC_006273.1 + 189448 0.66 0.980082
Target:  5'- uGACGgagCUcGUCGUCGUCCuccUCuCCCu -3'
miRNA:   3'- cCUGCa--GAaCGGCAGCAGGc--AGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.