miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 3' -55.3 NC_006273.1 + 137634 1.15 0.003186
Target:  5'- gGGACGUCUUGCCGUCGUCCGUCACCCg -3'
miRNA:   3'- -CCUGCAGAACGGCAGCAGGCAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 162977 0.77 0.530237
Target:  5'- cGGugGUUUcgucGCCGUCGUCgaCGUCGCCg -3'
miRNA:   3'- -CCugCAGAa---CGGCAGCAG--GCAGUGGg -5'
29810 3' -55.3 NC_006273.1 + 17185 0.77 0.568351
Target:  5'- cGGuCGUCc-GCCGUCGgCCGcCGCCCa -3'
miRNA:   3'- -CCuGCAGaaCGGCAGCaGGCaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 96949 0.75 0.626622
Target:  5'- gGGACGUa--GCCGgCGUCCGgCACCUa -3'
miRNA:   3'- -CCUGCAgaaCGGCaGCAGGCaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 116081 0.75 0.655895
Target:  5'- cGGCGUCUUGCgacuaagcacggCGUgGUCCGagaCACCCa -3'
miRNA:   3'- cCUGCAGAACG------------GCAgCAGGCa--GUGGG- -5'
29810 3' -55.3 NC_006273.1 + 198129 0.73 0.731701
Target:  5'- cGGCGUCUUccuccucGUCGUCGccgCCGUCGCgCCu -3'
miRNA:   3'- cCUGCAGAA-------CGGCAGCa--GGCAGUG-GG- -5'
29810 3' -55.3 NC_006273.1 + 11889 0.73 0.77828
Target:  5'- -cGCGUCUgggGCCGUUGUUCGgaggACCCu -3'
miRNA:   3'- ccUGCAGAa--CGGCAGCAGGCag--UGGG- -5'
29810 3' -55.3 NC_006273.1 + 213858 0.72 0.787083
Target:  5'- cGACGguggGUCGUCGUCCcGUC-CCCg -3'
miRNA:   3'- cCUGCagaaCGGCAGCAGG-CAGuGGG- -5'
29810 3' -55.3 NC_006273.1 + 85758 0.72 0.812701
Target:  5'- aGcCGUUUucgcUGCCGUCG-CCGUCcuGCCCa -3'
miRNA:   3'- cCuGCAGA----ACGGCAGCaGGCAG--UGGG- -5'
29810 3' -55.3 NC_006273.1 + 129669 0.71 0.829046
Target:  5'- aGGACGcccgCUU-CUGUCGUCCGcgACCCg -3'
miRNA:   3'- -CCUGCa---GAAcGGCAGCAGGCagUGGG- -5'
29810 3' -55.3 NC_006273.1 + 38377 0.71 0.829046
Target:  5'- cGGAgcugcUGUUaccGCCGcCGUCCGUCGCCg -3'
miRNA:   3'- -CCU-----GCAGaa-CGGCaGCAGGCAGUGGg -5'
29810 3' -55.3 NC_006273.1 + 154113 0.71 0.852325
Target:  5'- cGGACGcCauacGCCGU-GUCUGUCACgCCg -3'
miRNA:   3'- -CCUGCaGaa--CGGCAgCAGGCAGUG-GG- -5'
29810 3' -55.3 NC_006273.1 + 39704 0.71 0.85973
Target:  5'- cGGACGgCU--CCGUCGUCCGUgUGCCa -3'
miRNA:   3'- -CCUGCaGAacGGCAGCAGGCA-GUGGg -5'
29810 3' -55.3 NC_006273.1 + 234596 0.71 0.85973
Target:  5'- cGGACGgCU--CCGUCGUCCGUgUGCCa -3'
miRNA:   3'- -CCUGCaGAacGGCAGCAGGCA-GUGGg -5'
29810 3' -55.3 NC_006273.1 + 98550 0.71 0.85973
Target:  5'- gGGACGUCgggGCCc---UCCGUCGCaCCg -3'
miRNA:   3'- -CCUGCAGaa-CGGcagcAGGCAGUG-GG- -5'
29810 3' -55.3 NC_006273.1 + 54389 0.71 0.866947
Target:  5'- cGugGUCUccUCGUCGUCCGacucggUACCCa -3'
miRNA:   3'- cCugCAGAacGGCAGCAGGCa-----GUGGG- -5'
29810 3' -55.3 NC_006273.1 + 139669 0.7 0.887429
Target:  5'- cGGACGUggCUUGUgGgacgggCG-CCGUCACUCg -3'
miRNA:   3'- -CCUGCA--GAACGgCa-----GCaGGCAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 67109 0.7 0.890022
Target:  5'- cGACGUUUUuugacGCCGUCaGUCUGUuauugcagcaacugcCACCCg -3'
miRNA:   3'- cCUGCAGAA-----CGGCAG-CAGGCA---------------GUGGG- -5'
29810 3' -55.3 NC_006273.1 + 140532 0.7 0.900065
Target:  5'- gGGGCGUCgc-CCGUCcccaccaCCGUCcACCCg -3'
miRNA:   3'- -CCUGCAGaacGGCAGca-----GGCAG-UGGG- -5'
29810 3' -55.3 NC_006273.1 + 27225 0.69 0.91743
Target:  5'- cGcCGUUUUGCUGuccUCGUCCGggucuaCGCCCu -3'
miRNA:   3'- cCuGCAGAACGGC---AGCAGGCa-----GUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.