Results 21 - 40 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29810 | 3' | -55.3 | NC_006273.1 | + | 87575 | 0.69 | 0.921203 |
Target: 5'- gGGGCuGUUgcUGCUGUugaugaugcgacgcCGUCCGUCGCCg -3' miRNA: 3'- -CCUG-CAGa-ACGGCA--------------GCAGGCAGUGGg -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 177019 | 0.69 | 0.922787 |
Target: 5'- uGGCGUCUuccacgcugaucUGCaCGUU-UCCGUCGCUCg -3' miRNA: 3'- cCUGCAGA------------ACG-GCAGcAGGCAGUGGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 124028 | 0.69 | 0.922787 |
Target: 5'- cGGCGUUUucaggaggagacUGUCGUCGUCgGUacuggcgaCACCCa -3' miRNA: 3'- cCUGCAGA------------ACGGCAGCAGgCA--------GUGGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 206308 | 0.69 | 0.927927 |
Target: 5'- cGG-UGUUUUGCCGUCGuuuuuuuuuUCCGgaucgGCCCg -3' miRNA: 3'- -CCuGCAGAACGGCAGC---------AGGCag---UGGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 37138 | 0.69 | 0.927927 |
Target: 5'- cGGAgGUgCUggcgGCCGUgGcCUGUgGCCCg -3' miRNA: 3'- -CCUgCA-GAa---CGGCAgCaGGCAgUGGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 72464 | 0.69 | 0.932848 |
Target: 5'- --cCGUCggUGCCGgcggccaCGUCCGUCACg- -3' miRNA: 3'- ccuGCAGa-ACGGCa------GCAGGCAGUGgg -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 47906 | 0.69 | 0.932848 |
Target: 5'- -cGCGUCUUcGUCGUCGUCCucagCAUCUc -3' miRNA: 3'- ccUGCAGAA-CGGCAGCAGGca--GUGGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 138888 | 0.69 | 0.932848 |
Target: 5'- gGGAUgaugaaccaaGUCUUGCCGUgaCGUCgCGgCACCa -3' miRNA: 3'- -CCUG----------CAGAACGGCA--GCAG-GCaGUGGg -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 137487 | 0.69 | 0.932848 |
Target: 5'- cGGGCGgcuUUGCCGUCucuucgCgCGUCACUCu -3' miRNA: 3'- -CCUGCag-AACGGCAGca----G-GCAGUGGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 197976 | 0.68 | 0.937553 |
Target: 5'- cGACGaaUUGCCGUCGcgCC--CACCCc -3' miRNA: 3'- cCUGCagAACGGCAGCa-GGcaGUGGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 213139 | 0.68 | 0.942042 |
Target: 5'- -cGCGUCgcucGCCGgCGcCCGUCAUCUg -3' miRNA: 3'- ccUGCAGaa--CGGCaGCaGGCAGUGGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 221561 | 0.68 | 0.942042 |
Target: 5'- --cCGUCggucCCGaCGUCCGUCGCCa -3' miRNA: 3'- ccuGCAGaac-GGCaGCAGGCAGUGGg -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 25221 | 0.68 | 0.946315 |
Target: 5'- cGuCGUCaacGCCGUUGUCCacccucUCGCCCu -3' miRNA: 3'- cCuGCAGaa-CGGCAGCAGGc-----AGUGGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 38320 | 0.68 | 0.946315 |
Target: 5'- uGAcCGUCgccgUGUCGUCG-CCGcCACCg -3' miRNA: 3'- cCU-GCAGa---ACGGCAGCaGGCaGUGGg -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 54032 | 0.68 | 0.946315 |
Target: 5'- cGGACGUCacgccgGCgGUUGUuaCCGUCGuCUCg -3' miRNA: 3'- -CCUGCAGaa----CGgCAGCA--GGCAGU-GGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 24682 | 0.68 | 0.946315 |
Target: 5'- -cGCG-C-UGCCGUCGUCCGUU-CCg -3' miRNA: 3'- ccUGCaGaACGGCAGCAGGCAGuGGg -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 105358 | 0.68 | 0.950376 |
Target: 5'- aGGAUGaagUGaCCGugaugUCG-CCGUCACCCg -3' miRNA: 3'- -CCUGCagaAC-GGC-----AGCaGGCAGUGGG- -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 233628 | 0.68 | 0.950376 |
Target: 5'- cGGCGUCUguagUGCCaccGUCGUgCCGgccCACCg -3' miRNA: 3'- cCUGCAGA----ACGG---CAGCA-GGCa--GUGGg -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 38736 | 0.68 | 0.950376 |
Target: 5'- cGGCGUCUguagUGCCaccGUCGUgCCGgccCACCg -3' miRNA: 3'- cCUGCAGA----ACGG---CAGCA-GGCa--GUGGg -5' |
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29810 | 3' | -55.3 | NC_006273.1 | + | 183753 | 0.67 | 0.95787 |
Target: 5'- cGGGugcUGUCcgcGCCGcCGagccugCCGUCGCCCg -3' miRNA: 3'- -CCU---GCAGaa-CGGCaGCa-----GGCAGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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