miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29810 3' -55.3 NC_006273.1 + 123353 0.66 0.980082
Target:  5'- uGGGCGUCagauCCG-CGUCCGUUgauUCCg -3'
miRNA:   3'- -CCUGCAGaac-GGCaGCAGGCAGu--GGG- -5'
29810 3' -55.3 NC_006273.1 + 133574 0.66 0.980082
Target:  5'- cGAuCGUCUcguuucugccgaUGCCGgCGUCaGUCGCCg -3'
miRNA:   3'- cCU-GCAGA------------ACGGCaGCAGgCAGUGGg -5'
29810 3' -55.3 NC_006273.1 + 40192 0.66 0.979665
Target:  5'- aGGAUGUUcUGCaCGgCGUCCGacggcguuuuggCGCCCc -3'
miRNA:   3'- -CCUGCAGaACG-GCaGCAGGCa-----------GUGGG- -5'
29810 3' -55.3 NC_006273.1 + 198347 0.66 0.97793
Target:  5'- aGGACGU---GCUGUCGUUCuUCGCUUg -3'
miRNA:   3'- -CCUGCAgaaCGGCAGCAGGcAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 24562 0.66 0.975612
Target:  5'- cGGGCuuucCUUGUcaCGUUGUCUGggCGCCCg -3'
miRNA:   3'- -CCUGca--GAACG--GCAGCAGGCa-GUGGG- -5'
29810 3' -55.3 NC_006273.1 + 187334 0.66 0.975612
Target:  5'- cGACGUCggucaGCgG-CG-CCGUCACCg -3'
miRNA:   3'- cCUGCAGaa---CGgCaGCaGGCAGUGGg -5'
29810 3' -55.3 NC_006273.1 + 220252 0.66 0.975612
Target:  5'- -uGCGUCccgGCCGcggaCGUCCcGUCACgCCu -3'
miRNA:   3'- ccUGCAGaa-CGGCa---GCAGG-CAGUG-GG- -5'
29810 3' -55.3 NC_006273.1 + 152454 0.67 0.973121
Target:  5'- cGGAUGUgCUUGCCG-CGcagCUG-CGCCUc -3'
miRNA:   3'- -CCUGCA-GAACGGCaGCa--GGCaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 215160 0.67 0.970451
Target:  5'- cGcCGUCUuucgUGCCGUCG-CCGcacugcguugUCACUCg -3'
miRNA:   3'- cCuGCAGA----ACGGCAGCaGGC----------AGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 434 0.67 0.970451
Target:  5'- -cACGUCgcuuuuauucGCCGUCG-CCG-UACCCa -3'
miRNA:   3'- ccUGCAGaa--------CGGCAGCaGGCaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 170110 0.67 0.970451
Target:  5'- cGGugGUCguugucgcUGCCGU-GUCCG-CGCUUu -3'
miRNA:   3'- -CCugCAGa-------ACGGCAgCAGGCaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 235265 0.67 0.970451
Target:  5'- -cACGUCgcuuuuauucGCCGUCG-CCG-UACCCa -3'
miRNA:   3'- ccUGCAGaa--------CGGCAGCaGGCaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 195327 0.67 0.970451
Target:  5'- -cACGUCgcuuuuauucGCCGUCG-CCG-UACCCa -3'
miRNA:   3'- ccUGCAGaa--------CGGCAGCaGGCaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 171011 0.67 0.967596
Target:  5'- cGGACGUCgcgccUGCCGUUGauucUUCGUgAUCg -3'
miRNA:   3'- -CCUGCAGa----ACGGCAGC----AGGCAgUGGg -5'
29810 3' -55.3 NC_006273.1 + 82887 0.67 0.967596
Target:  5'- cGGugGU--UGCCcaacaggauuucGUUGUCC-UCGCCCa -3'
miRNA:   3'- -CCugCAgaACGG------------CAGCAGGcAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 169672 0.67 0.967596
Target:  5'- aGGACGgc--GCCGUgG-CCGUUGCCg -3'
miRNA:   3'- -CCUGCagaaCGGCAgCaGGCAGUGGg -5'
29810 3' -55.3 NC_006273.1 + 47650 0.67 0.967596
Target:  5'- uGGACGaUC-UGCCGcugaaCGUCgGgUUACCCa -3'
miRNA:   3'- -CCUGC-AGaACGGCa----GCAGgC-AGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 161647 0.67 0.96455
Target:  5'- cGGGCcUCg-GCCGcCG-CCGcCACCCa -3'
miRNA:   3'- -CCUGcAGaaCGGCaGCaGGCaGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 30369 0.67 0.96131
Target:  5'- aGGAUGUCgucgcggcGUCGcagcUCGUCaCGUCGCUCu -3'
miRNA:   3'- -CCUGCAGaa------CGGC----AGCAG-GCAGUGGG- -5'
29810 3' -55.3 NC_006273.1 + 83381 0.67 0.96131
Target:  5'- gGGccACGUCgggcUGCUGcCG-CCGcCACCCg -3'
miRNA:   3'- -CC--UGCAGa---ACGGCaGCaGGCaGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.